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SchistoDB: an updated genome resource for the three key schistosomes of humans.
Adhemar Zerlotini
,
Eric R. G. R. Aguiar
,
Fudong Yu
,
Huayong Xu
,
Yixue Li
,
Neil D. Young
,
Robin B. Gasser
,
Anna V. Protasio
,
Matthew Berriman
,
David S. Roos
,
Jessica C. Kissinger
, and
Guilherme Oliveira
.
Nucleic Acids Research
41(Database-Issue):728-731
(
2013
)
Adhemar Zerlotini
,
Eric R. G. R. Aguiar
,
Fudong Yu
,
Huayong Xu
,
Yixue Li
,
Neil D. Young
,
Robin B. Gasser
,
Anna V. Protasio
,
Matthew Berriman
,
David S. Roos
,
Jessica C. Kissinger
, and
Guilherme Oliveira
.
Nucleic Acids Research
41(Database-Issue):728-731
(
2013
)
4 months and 14 days ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Designing and implementing chemoinformatic approaches in TDR Targets Database: linking genes to chemical compounds in tropical disease causing pathogens.
María P. Magariños
,
John P. Overington
,
Santiago J. Carmona
,
Dhanasekaran Shanmugam
,
Maria A. Doyle
,
Stuart A. Ralph
,
Gregory J. Crowther
,
Christiane Hertz-Fowler
,
Solomon Nwaka
,
Matthew Berriman
,
David S. Roos
,
Wesley C. Van Voorhis
, and
Fernán Agüero
.
BMC Bioinformatics
11(S-10):O10
(
2010
)
María P. Magariños
,
John P. Overington
,
Santiago J. Carmona
,
Dhanasekaran Shanmugam
,
Maria A. Doyle
,
Stuart A. Ralph
,
Gregory J. Crowther
,
Christiane Hertz-Fowler
,
Solomon Nwaka
,
Matthew Berriman
,
David S. Roos
,
Wesley C. Van Voorhis
, and
Fernán Agüero
.
BMC Bioinformatics
11(S-10):O10
(
2010
)
4 months and 20 days ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Bring out your codes! Bring out your codes! Increasing Software Visibility and Re-use
Alice Allen
,
G. Bruce Berriman
,
Robert Brunner
,
Dan Burger
,
Kimberly DuPrie
,
Robert J. Hanisch
,
Robert G. Mann
,
Jessica Mink
,
Christer Sandin
,
Keith Shortridge
, and
Peter J. Teuben
.
CoRR
(
2012
)
Alice Allen
,
G. Bruce Berriman
,
Robert Brunner
,
Dan Burger
,
Kimberly DuPrie
,
Robert J. Hanisch
,
Robert G. Mann
,
Jessica Mink
,
Christer Sandin
,
Keith Shortridge
, and
Peter J. Teuben
.
CoRR
(
2012
)
4 months and 22 days ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Astrophysics Source Code Library
Alice Allen
,
Kimberly DuPrie
,
G. Bruce Berriman
,
Robert J. Hanisch
,
Jessica Mink
, and
Peter J. Teuben
.
CoRR
(
2012
)
Alice Allen
,
Kimberly DuPrie
,
G. Bruce Berriman
,
Robert J. Hanisch
,
Jessica Mink
, and
Peter J. Teuben
.
CoRR
(
2012
)
4 months and 23 days ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
A Tale Of 160 Scientists, Three Applications, A Workshop and A Cloud
G. Bruce Berriman
,
Carolyn Brinkworth
,
Dawn Gelino
,
Dennis K. Wittman
,
Ewa Deelman
,
Gideon Juve
,
Mats Rynge
, and
Jamie Kinney
.
CoRR
(
2012
)
G. Bruce Berriman
,
Carolyn Brinkworth
,
Dawn Gelino
,
Dennis K. Wittman
,
Ewa Deelman
,
Gideon Juve
,
Mats Rynge
, and
Jamie Kinney
.
CoRR
(
2012
)
5 months and 25 days ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
TriTrypDB: a functional genomic resource for the Trypanosomatidae.
Martin Aslett
,
Cristina Aurrecoechea
,
Matthew Berriman
,
John Brestelli
,
Brian P. Brunk
,
Mark Carrington
,
Daniel P. Depledge
,
Steve Fischer
,
Bindu Gajria
,
Xin Gao
,
Malcolm J. Gardner
,
Alan Gingle
,
Gregory R. Grant
,
Omar S. Harb
,
Mark Heiges
,
Christiane Hertz-Fowler
,
Robin Houston
,
Frank Innamorato
,
John Iodice
,
Jessica C. Kissinger
,
Eileen Kraemer
,
Wei Li 0031
,
Flora J. Logan
,
John A. Miller
,
Siddhartha Mitra
,
Peter J. Myler
,
Vishal Nayak
,
Cary Pennington
,
Isabelle Phan
,
Deborah F. Pinney
,
Gowthaman Ramasamy
,
Matthew B. Rogers
,
David S. Roos
,
Chris Ross
,
Dhileep Sivam
,
Deborah F. Smith
,
Ganesh Srinivasamoorthy
,
Christian J. Stoeckert Jr.
,
Sandhya Subramanian
,
Ryan Thibodeau
,
Adrian Tivey
,
Charles Treatman
,
Giles Velarde
, and
Haiming Wang
.
Nucleic Acids Research
38(Database-Issue):457-462
(
2010
)
Martin Aslett
,
Cristina Aurrecoechea
,
Matthew Berriman
,
John Brestelli
,
Brian P. Brunk
,
Mark Carrington
,
Daniel P. Depledge
,
Steve Fischer
,
Bindu Gajria
,
Xin Gao
,
Malcolm J. Gardner
,
Alan Gingle
,
Gregory R. Grant
,
Omar S. Harb
,
Mark Heiges
,
Christiane Hertz-Fowler
,
Robin Houston
,
Frank Innamorato
,
John Iodice
,
Jessica C. Kissinger
,
Eileen Kraemer
,
Wei Li 0031
,
Flora J. Logan
,
John A. Miller
,
Siddhartha Mitra
,
Peter J. Myler
,
Vishal Nayak
,
Cary Pennington
,
Isabelle Phan
,
Deborah F. Pinney
,
Gowthaman Ramasamy
,
Matthew B. Rogers
,
David S. Roos
,
Chris Ross
,
Dhileep Sivam
,
Deborah F. Smith
,
Ganesh Srinivasamoorthy
,
Christian J. Stoeckert Jr.
,
Sandhya Subramanian
,
Ryan Thibodeau
,
Adrian Tivey
,
Charles Treatman
,
Giles Velarde
, and
Haiming Wang
.
Nucleic Acids Research
38(Database-Issue):457-462
(
2010
)
5 months and 27 days ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Accessing and Visualizing Scientific Spatiotemporal Data.
Daniel S. Katz
,
Attila Bergou
,
G. Bruce Berriman
,
Gary L. Block
,
Jim Collier
,
David W. Curkendall
,
John Good
,
Laura Husman
,
Joseph C. Jacob
,
Anastasia C. Laity
,
Peggy Li
,
Craig Miller
,
Tom Prince
,
Herb Siegel
, and
Roy Williams
.
SSDBM,
page 107-110.
IEEE Computer Society,
(
2004
)
Daniel S. Katz
,
Attila Bergou
,
G. Bruce Berriman
,
Gary L. Block
,
Jim Collier
,
David W. Curkendall
,
John Good
,
Laura Husman
,
Joseph C. Jacob
,
Anastasia C. Laity
,
Peggy Li
,
Craig Miller
,
Tom Prince
,
Herb Siegel
, and
Roy Williams
.
SSDBM,
page 107-110.
IEEE Computer Society,
(
2004
)
8 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Montage: a grid portal and software toolkit for science-grade astronomical image mosaicking.
Joseph C. Jacob
,
Daniel S. Katz
,
G. Bruce Berriman
,
John Good
,
Anastasia C. Laity
,
Ewa Deelman
,
Carl Kesselman
,
Gurmeet Singh
,
Mei-Hui Su
,
Thomas A. Prince
, and
Roy Williams
.
IJCSE
4(2):73-87
(
2009
)
Joseph C. Jacob
,
Daniel S. Katz
,
G. Bruce Berriman
,
John Good
,
Anastasia C. Laity
,
Ewa Deelman
,
Carl Kesselman
,
Gurmeet Singh
,
Mei-Hui Su
,
Thomas A. Prince
, and
Roy Williams
.
IJCSE
4(2):73-87
(
2009
)
11 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Using Clouds for Science, is it just Kicking the Can down the Road?.
Ewa Deelman
,
Gideon Juve
, and
G. Bruce Berriman
.
CLOSER,
page 127-134.
SciTePress,
(
2012
)
Ewa Deelman
,
Gideon Juve
, and
G. Bruce Berriman
.
CLOSER,
page 127-134.
SciTePress,
(
2012
)
a year ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
WormBase 2012: more genomes, more data, new website.
Karen Yook
,
Todd W. Harris
,
Tamberlyn Bieri
,
Abigail Cabunoc
,
Juancarlos Chan
,
Wen J. Chen
,
Paul Davis
,
Norie De La Cruz
,
Adrian Duong
,
Ruihua Fang
,
Uma Ganesan
,
Christian Grove
,
Kevin L. Howe
,
Snehalata Kadam
,
Ranjana Kishore
,
Raymond Lee
,
Yuling Li
,
Hans-Michael Müller
,
Cecilia Nakamura
,
Bill Nash
,
Philip Ozersky
,
Michael Paulini
,
Daniela Raciti
,
Arun Rangarajan
,
Gary Schindelman
,
Xiaoqi Shi
,
Erich M. Schwarz
,
Mary Ann Tuli
,
Kimberly Van Auken
,
Daniel Wang
,
Xiaodong Wang
,
Gary Williams
,
Jonathan Hodgkin
,
Matthew Berriman
,
Richard Durbin
,
Paul Kersey
,
John Spieth
,
Lincoln Stein
, and
Paul W. Sternberg
.
Nucleic Acids Research
40(Database-Issue):735-741
(
2012
)
Karen Yook
,
Todd W. Harris
,
Tamberlyn Bieri
,
Abigail Cabunoc
,
Juancarlos Chan
,
Wen J. Chen
,
Paul Davis
,
Norie De La Cruz
,
Adrian Duong
,
Ruihua Fang
,
Uma Ganesan
,
Christian Grove
,
Kevin L. Howe
,
Snehalata Kadam
,
Ranjana Kishore
,
Raymond Lee
,
Yuling Li
,
Hans-Michael Müller
,
Cecilia Nakamura
,
Bill Nash
,
Philip Ozersky
,
Michael Paulini
,
Daniela Raciti
,
Arun Rangarajan
,
Gary Schindelman
,
Xiaoqi Shi
,
Erich M. Schwarz
,
Mary Ann Tuli
,
Kimberly Van Auken
,
Daniel Wang
,
Xiaodong Wang
,
Gary Williams
,
Jonathan Hodgkin
,
Matthew Berriman
,
Richard Durbin
,
Paul Kersey
,
John Spieth
,
Lincoln Stein
, and
Paul W. Sternberg
.
Nucleic Acids Research
40(Database-Issue):735-741
(
2012
)
a year and a month ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
GeneDB - an annotation database for pathogens.
Flora J. Logan-Klumpler
,
Nishadi De Silva
,
Ulrike Böhme
,
Matthew B. Rogers
,
Giles Velarde
,
Jacqueline A. McQuillan
,
Tim Carver
,
Martin Aslett
,
Christian Olsen
,
Sandhya Subramanian
,
Isabelle Phan
,
Carol Farris
,
Siddhartha Mitra
,
Gowthaman Ramasamy
,
Haiming Wang
,
Adrian Tivey
,
Andrew Jackson
,
Robin Houston
,
Julian Parkhill
,
Matthew Holden
,
Omar S. Harb
,
Brian P. Brunk
,
Peter J. Myler
,
David S. Roos
,
Mark Carrington
,
Deborah F. Smith
,
Christiane Hertz-Fowler
, and
Matthew Berriman
.
Nucleic Acids Research
40(Database-Issue):98-108
(
2012
)
Flora J. Logan-Klumpler
,
Nishadi De Silva
,
Ulrike Böhme
,
Matthew B. Rogers
,
Giles Velarde
,
Jacqueline A. McQuillan
,
Tim Carver
,
Martin Aslett
,
Christian Olsen
,
Sandhya Subramanian
,
Isabelle Phan
,
Carol Farris
,
Siddhartha Mitra
,
Gowthaman Ramasamy
,
Haiming Wang
,
Adrian Tivey
,
Andrew Jackson
,
Robin Houston
,
Julian Parkhill
,
Matthew Holden
,
Omar S. Harb
,
Brian P. Brunk
,
Peter J. Myler
,
David S. Roos
,
Mark Carrington
,
Deborah F. Smith
,
Christiane Hertz-Fowler
, and
Matthew Berriman
.
Nucleic Acids Research
40(Database-Issue):98-108
(
2012
)
a year and a month ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
An Evaluation of the Cost and Performance of Scientific Workflows on Amazon EC2.
Gideon Juve
,
Ewa Deelman
,
G. Bruce Berriman
,
Benjamin P. Berman
, and
Philip Maechling
.
J. Grid Comput.
10(1):5-21
(
2012
)
Gideon Juve
,
Ewa Deelman
,
G. Bruce Berriman
,
Benjamin P. Berman
, and
Philip Maechling
.
J. Grid Comput.
10(1):5-21
(
2012
)
a year and a month ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
GeneDB: a resource for prokaryotic and eukaryotic organisms.
Christiane Hertz-Fowler
,
Chris S. Peacock
,
Valerie Wood
,
Martin Aslett
,
Arnaud Kerhornou
,
Paul Mooney
,
Adrian Tivey
,
Matthew Berriman
,
Neil Hall
,
Kim Rutherford
,
Julian Parkhill
,
Alasdair C. Ivens
,
Marie-Adèle Rajandream
, and
Bart Barrell
.
Nucleic Acids Research
32(Database-Issue):339-343
(
2004
)
Christiane Hertz-Fowler
,
Chris S. Peacock
,
Valerie Wood
,
Martin Aslett
,
Arnaud Kerhornou
,
Paul Mooney
,
Adrian Tivey
,
Matthew Berriman
,
Neil Hall
,
Kim Rutherford
,
Julian Parkhill
,
Alasdair C. Ivens
,
Marie-Adèle Rajandream
, and
Bart Barrell
.
Nucleic Acids Research
32(Database-Issue):339-343
(
2004
)
a year and a month ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Multi-wavelength image space: another Grid-enabled science.
Roy Williams
,
G. Bruce Berriman
,
Ewa Deelman
,
John Good
,
Joseph C. Jacob
,
Carl Kesselman
,
Carol Lonsdale
,
Seb Oliver
, and
Thomas A. Prince
.
Concurrency and Computation: Practice and Experience
15(6):539-549
(
2003
)
Roy Williams
,
G. Bruce Berriman
,
Ewa Deelman
,
John Good
,
Joseph C. Jacob
,
Carl Kesselman
,
Carol Lonsdale
,
Seb Oliver
, and
Thomas A. Prince
.
Concurrency and Computation: Practice and Experience
15(6):539-549
(
2003
)
a year and a month ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data.
Tim Carver
,
Simon R. Harris
,
Matthew Berriman
,
Julian Parkhill
, and
Jacqueline A. McQuillan
.
Bioinformatics
28(4):464-469
(
2012
)
Tim Carver
,
Simon R. Harris
,
Matthew Berriman
,
Julian Parkhill
, and
Jacqueline A. McQuillan
.
Bioinformatics
28(4):464-469
(
2012
)
a year and 3 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Experiences Using GlideinWMS and the Corral Frontend across Cyberinfrastructures.
Mats Rynge
,
Gideon Juve
,
Gaurang Mehta
,
Ewa Deelman
,
Krista Larson
,
Burt Holzman
,
Igor Sfiligoi
,
Frank Würthwein
,
G. Bruce Berriman
, and
Scott Callaghan
.
eScience,
page 311-318.
IEEE Computer Society,
(
2011
)
Mats Rynge
,
Gideon Juve
,
Gaurang Mehta
,
Ewa Deelman
,
Krista Larson
,
Burt Holzman
,
Igor Sfiligoi
,
Frank Würthwein
,
G. Bruce Berriman
, and
Scott Callaghan
.
eScience,
page 311-318.
IEEE Computer Society,
(
2011
)
a year and 4 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
A wireless sensor network test-bed for structural health monitoring of bridges.
Athanassios Boulis
,
Rodney Berriman
,
Saeed Attar
, and
Yuriy Tselishchev
.
LCN,
page 1040-1043.
IEEE,
(
2011
)
Athanassios Boulis
,
Rodney Berriman
,
Saeed Attar
, and
Yuriy Tselishchev
.
LCN,
page 1040-1043.
IEEE,
(
2011
)
a year and 4 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Pipeline-Centric Provenance Model
Paul T. Groth
,
Ewa Deelman
,
Gideon Juve
,
Gaurang Mehta
, and
G. Bruce Berriman
.
CoRR
(
2010
)
Paul T. Groth
,
Ewa Deelman
,
Gideon Juve
,
Gaurang Mehta
, and
G. Bruce Berriman
.
CoRR
(
2010
)
a year and 5 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Scientific Workflow Applications on Amazon EC2
Gideon Juve
,
Ewa Deelman
,
Karan Vahi
,
Gaurang Mehta
,
G. Bruce Berriman
,
Benjamin P. Berman
, and
Philip Maechling
.
CoRR
(
2010
)
Gideon Juve
,
Ewa Deelman
,
Karan Vahi
,
Gaurang Mehta
,
G. Bruce Berriman
,
Benjamin P. Berman
, and
Philip Maechling
.
CoRR
(
2010
)
a year and 5 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
The Application of Cloud Computing to Astronomy: A Study of Cost and Performance
G. Bruce Berriman
,
Ewa Deelman
,
Gideon Juve
,
Moira Regelson
, and
Peter Plavchan
.
CoRR
(
2010
)
G. Bruce Berriman
,
Ewa Deelman
,
Gideon Juve
,
Moira Regelson
, and
Peter Plavchan
.
CoRR
(
2010
)
a year and 5 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
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