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eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.
Jean Muller, Damian Szklarczyk, Philippe Julien, Ivica Letunic, Alexander Roth, Michael Kuhn 0004, S. Powell, Christian von Mering, Tobias Doerks, Lars Juhl Jensen, and Peer Bork Nucleic Acids Research 38(Database-Issue):190-195 (2010)
to dblp by dblp on Jan 15, 2012, 12:00 AM
URL | BibTeX
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.
Damian Szklarczyk, Andrea Franceschini, Michael Kuhn 0004, Milan Simonovic, Alexander Roth, Pablo Minguez, Tobias Doerks, Manuel Stark, Jean Muller, Peer Bork, Lars Juhl Jensen, and Christian von Mering Nucleic Acids Research 39(Database-Issue):561-568 (2011)
to dblp by dblp on Jan 15, 2012, 12:00 AM
URL | BibTeX
Extracting Regulatory Gene Expression Networks From Pubmed.
Jasmin Saric, Lars Juhl Jensen, Peer Bork, Rossitza Ouzounova, and Isabel Rojas ACL, page 191-198. ACL, (2004)
to dblp by dblp on Dec 23, 2011, 12:00 AM
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A Story about Learning.
Alfred Bork ICCE, page 1516-1517. (2002)
to dblp by dblp on Dec 14, 2011, 12:00 AM
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Computer-Based Learning Units for Many Language and Cultures.
Alfred Bork, and Rika Yoshii ICCE, page 924-928. (2002)
to dblp by dblp on Dec 14, 2011, 12:00 AM
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Ontologies in Quantitative Biology: A Basis for Comparison, Integration, and Discovery
Lars J. Jensen, and Peer Bork PLoS Biol 8(5):e1000374 (May 2010)
to bio-ontology by tral on Sep 20, 2011, 9:23 PM
URL | DOI | BibTeX
Heat shock protein-90-alpha, a prolactin-STAT5 target gene identified in breast cancer cells, is involved in apoptosis regulation
C. Perotti, R. Liu, C. T. Parusel, N. Bocher, J. Schultz, P. Bork, E. Pfitzner, B. Groner, and C. S. Shemanko Breast Cancer Res. (2008)
to imported by jschultz on Jul 21, 2011, 4:10 PM
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SMART 5: domains in the context of genomes and networks
I. Letunic, R. R. Copley, B. Pils, S. Pinkert, J. Schultz, and P. Bork Nucleic Acids Res. (January 2006)
to imported by jschultz and 1 other user on Jul 21, 2011, 4:10 PM
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Structural genomics of human proteins--target selection and generation of a public catalogue of expression clones
K. Bussow, C. Scheich, V. Sievert, U. Harttig, J. Schultz, B. Simon, P. Bork, H. Lehrach, and U. Heinemann Microb. Cell Fact. (July 2005)
to imported by jschultz on Jul 21, 2011, 4:10 PM
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SMART 4.0: towards genomic data integration
I. Letunic, R. R. Copley, S. Schmidt, F. D. Ciccarelli, T. Doerks, J. Schultz, C. P. Ponting, and P. Bork Nucleic Acids Res. (January 2004)
to imported by jschultz and 1 other user on Jul 21, 2011, 4:10 PM
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Initial sequencing and comparative analysis of the mouse genome
R. H. Waterston, K. Lindblad-Toh, E. Birney, J. Rogers, J. F. Abril, P. Agarwal, R. Agarwala, R. Ainscough, M. Alexandersson, P. An, S. E. Antonarakis, J. Attwood, R. Baertsch, J. Bailey, K. Barlow, S. Beck, E. Berry, B. Birren, T. Bloom, P. Bork, M. Botcherby, N. Bray, M. R. Brent, D. G. Brown, S. D. Brown, C. Bult, J. Burton, J. Butler, R. D. Campbell, P. Carninci, S. Cawley, F. Chiaromonte, A. T. Chinwalla, D. M. Church, M. Clamp, C. Clee, F. S. Collins, L. L. Cook, R. R. Copley, A. Coulson, O. Couronne, J. Cuff, V. Curwen, T. Cutts, M. Daly, R. David, J. Davies, K. D. Delehaunty, J. Deri, E. T. Dermitzakis, C. Dewey, N. J. Dickens, M. Diekhans, S. Dodge, I. Dubchak, D. M. Dunn, S. R. Eddy, L. Elnitski, R. D. Emes, P. Eswara, E. Eyras, A. Felsenfeld, G. A. Fewell, P. Flicek, K. Foley, W. N. Frankel, L. A. Fulton, R. S. Fulton, T. S. Furey, D. Gage, R. A. Gibbs, G. Glusman, S. Gnerre, N. Goldman, L. Goodstadt, D. Grafham, T. A. Graves, E. D. Green, S. Gregory, R. Guigo, M. Guyer, R. C. Hardison, D. Haussler, Y. Hayashizaki, L. W. Hillier, A. Hinrichs, W. Hlavina, T. Holzer, F. Hsu, A. Hua, T. Hubbard, A. Hunt, I. Jackson, D. B. Jaffe, L. S. Johnson, M. Jones, T. A. Jones, A. Joy, M. Kamal, E. K. Karlsson, D. Karolchik, A. Kasprzyk, J. Kawai, E. Keibler, C. Kells, W. J. Kent, A. Kirby, D. L. Kolbe, I. Korf, R. S. Kucherlapati, E. J. Kulbokas, D. Kulp, T. Landers, J. P. Leger, S. Leonard, I. Letunic, R. Levine, J. Li, M. Li, C. Lloyd, S. Lucas, B. Ma, D. R. Maglott, E. R. Mardis, L. Matthews, E. Mauceli, J. H. Mayer, M. McCarthy, W. R. McCombie, S. McLaren, K. McLay, J. D. McPherson, J. Meldrim, B. Meredith, J. P. Mesirov, W. Miller, T. L. Miner, E. Mongin, K. T. Montgomery, M. Morgan, R. Mott, J. C. Mullikin, D. M. Muzny, W. E. Nash, J. O. Nelson, M. N. Nhan, R. Nicol, Z. Ning, C. Nusbaum, M. J. O'Connor, Y. Okazaki, K. Oliver, E. Overton-Larty, L. Pachter, G. Parra, K. H. Pepin, J. Peterson, P. Pevzner, R. Plumb, C. S. Pohl, A. Poliakov, T. C. Ponce, C. P. Ponting, S. Potter, M. Quail, A. Reymond, B. A. Roe, K. M. Roskin, E. M. Rubin, A. G. Rust, R. Santos, V. Sapojnikov, B. Schultz, J. Schultz, M. S. Schwartz, S. Schwartz, C. Scott, S. Seaman, S. Searle, T. Sharpe, A. Sheridan, R. Shownkeen, S. Sims, J. B. Singer, G. Slater, A. Smit, D. R. Smith, B. Spencer, A. Stabenau, N. Stange-Thomann, C. Sugnet, M. Suyama, G. Tesler, J. Thompson, D. Torrents, E. Trevaskis, J. Tromp, C. Ucla, A. Ureta-Vidal, J. P. Vinson, A. C. Von Niederhausern, C. M. Wade, M. Wall, R. J. Weber, R. B. Weiss, M. C. Wendl, A. P. West, K. Wetterstrand, R. Wheeler, S. Whelan, J. Wierzbowski, D. Willey, S. Williams, R. K. Wilson, E. Winter, K. C. Worley, D. Wyman, S. Yang, S. P. Yang, E. M. Zdobnov, M. C. Zody, and E. S. Lander Nature (December 2002)
to imported by jschultz on Jul 21, 2011, 4:10 PM
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Sequence analysis of multidomain proteins: past perspectives and future directions
R. R. Copley, C. P. Ponting, J. Schultz, and P. Bork Adv. Protein Chem. (2002)
to imported by jschultz on Jul 21, 2011, 4:10 PM
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Predicting protein cellular localization using a domain projection method
R. Mott, J. Schultz, P. Bork, and C. P. Ponting Genome Res. (August 2002)
to imported by jschultz on Jul 21, 2011, 4:10 PM
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Functional organization of the yeast proteome by systematic analysis of protein complexes
A. C. Gavin, M. Bosche, R. Krause, P. Grandi, M. Marzioch, A. Bauer, J. Schultz, J. M. Rick, A. M. Michon, C. M. Cruciat, M. Remor, C. Hofert, M. Schelder, M. Brajenovic, H. Ruffner, A. Merino, K. Klein, M. Hudak, D. Dickson, T. Rudi, V. Gnau, A. Bauch, S. Bastuck, B. Huhse, C. Leutwein, M. A. Heurtier, R. R. Copley, A. Edelmann, E. Querfurth, V. Rybin, G. Drewes, M. Raida, T. Bouwmeester, P. Bork, B. Seraphin, B. Kuster, G. Neubauer, and G. Superti-Furga Nature (January 2002)
to imported by jschultz on Jul 21, 2011, 4:10 PM
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Systematic identification of novel protein domain families associated with nuclear functions
T. Doerks, R. R. Copley, J. Schultz, C. P. Ponting, and P. Bork Genome Res. (January 2002)
to imported by jschultz on Jul 21, 2011, 4:10 PM
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Recent improvements to the SMART domain-based sequence annotation resource
I. Letunic, L. Goodstadt, N. J. Dickens, T. Doerks, J. Schultz, R. Mott, F. Ciccarelli, R. R. Copley, C. P. Ponting, and P. Bork Nucleic Acids Res. (January 2002)
to imported by jschultz and 1 other user on Jul 21, 2011, 4:10 PM
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Initial sequencing and analysis of the human genome
E. S. Lander, L. M. Linton, B. Birren, C. Nusbaum, M. C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. FitzHugh, R. Funke, D. Gage, K. Harris, A. Heaford, J. Howland, L. Kann, J. Lehoczky, R. LeVine, P. McEwan, K. McKernan, J. Meldrim, J. P. Mesirov, C. Miranda, W. Morris, J. Naylor, C. Raymond, M. Rosetti, R. Santos, A. Sheridan, C. Sougnez, N. Stange-Thomann, N. Stojanovic, A. Subramanian, D. Wyman, J. Rogers, J. Sulston, R. Ainscough, S. Beck, D. Bentley, J. Burton, C. Clee, N. Carter, A. Coulson, R. Deadman, P. Deloukas, A. Dunham, I. Dunham, R. Durbin, L. French, D. Grafham, S. Gregory, T. Hubbard, S. Humphray, A. Hunt, M. Jones, C. Lloyd, A. McMurray, L. Matthews, S. Mercer, S. Milne, J. C. Mullikin, A. Mungall, R. Plumb, M. Ross, R. Shownkeen, S. Sims, R. H. Waterston, R. K. Wilson, L. W. Hillier, J. D. McPherson, M. A. Marra, E. R. Mardis, L. A. Fulton, A. T. Chinwalla, K. H. Pepin, W. R. Gish, S. L. Chissoe, M. C. Wendl, K. D. Delehaunty, T. L. Miner, A. Delehaunty, J. B. Kramer, L. L. Cook, R. S. Fulton, D. L. Johnson, P. J. Minx, S. W. Clifton, T. Hawkins, E. Branscomb, P. Predki, P. Richardson, S. Wenning, T. Slezak, N. Doggett, J. F. Cheng, A. Olsen, S. Lucas, C. Elkin, E. Uberbacher, M. Frazier, R. A. Gibbs, D. M. Muzny, S. E. Scherer, J. B. Bouck, E. J. Sodergren, K. C. Worley, C. M. Rives, J. H. Gorrell, M. L. Metzker, S. L. Naylor, R. S. Kucherlapati, D. L. Nelson, G. M. Weinstock, Y. Sakaki, A. Fujiyama, M. Hattori, T. Yada, A. Toyoda, T. Itoh, C. Kawagoe, H. Watanabe, Y. Totoki, T. Taylor, J. Weissenbach, R. Heilig, W. Saurin, F. Artiguenave, P. Brottier, T. Bruls, E. Pelletier, C. Robert, P. Wincker, D. R. Smith, L. Doucette-Stamm, M. Rubenfield, K. Weinstock, H. M. Lee, J. Dubois, A. Rosenthal, M. Platzer, G. Nyakatura, S. Taudien, A. Rump, H. Yang, J. Yu, J. Wang, G. Huang, J. Gu, L. Hood, L. Rowen, A. Madan, S. Qin, R. W. Davis, N. A. Federspiel, A. P. Abola, M. J. Proctor, R. M. Myers, J. Schmutz, M. Dickson, J. Grimwood, D. R. Cox, M. V. Olson, R. Kaul, C. Raymond, N. Shimizu, K. Kawasaki, S. Minoshima, G. A. Evans, M. Athanasiou, R. Schultz, B. A. Roe, F. Chen, H. Pan, J. Ramser, H. Lehrach, R. Reinhardt, W. R. McCombie, M. de la Bastide, N. Dedhia, H. Blocker, K. Hornischer, G. Nordsiek, R. Agarwala, L. Aravind, J. A. Bailey, A. Bateman, S. Batzoglou, E. Birney, P. Bork, D. G. Brown, C. B. Burge, L. Cerutti, H. C. Chen, D. Church, M. Clamp, R. R. Copley, T. Doerks, S. R. Eddy, E. E. Eichler, T. S. Furey, J. Galagan, J. G. Gilbert, C. Harmon, Y. Hayashizaki, D. Haussler, H. Hermjakob, K. Hokamp, W. Jang, L. S. Johnson, T. A. Jones, S. Kasif, A. Kaspryzk, S. Kennedy, W. J. Kent, P. Kitts, E. V. Koonin, I. Korf, D. Kulp, D. Lancet, T. M. Lowe, A. McLysaght, T. Mikkelsen, J. V. Moran, N. Mulder, V. J. Pollara, C. P. Ponting, G. Schuler, J. Schultz, G. Slater, A. F. Smit, E. Stupka, J. Szustakowski, D. Thierry-Mieg, J. Thierry-Mieg, L. Wagner, J. Wallis, R. Wheeler, A. Williams, Y. I. Wolf, K. H. Wolfe, S. P. Yang, R. F. Yeh, F. Collins, M. S. Guyer, J. Peterson, A. Felsenfeld, K. A. Wetterstrand, A. Patrinos, M. J. Morgan, P. de Jong, J. J. Catanese, K. Osoegawa, H. Shizuya, S. Choi, Y. J. Chen, and J. Szustakowki Nature (February 2001)
to imported by jschultz on Jul 21, 2011, 4:10 PM
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Molecular characterization of a cDNA encoding functional human CLK4 kinase and localization to chromosome 5q35 correction of 4q35
J. Schultz, T. Jones, P. Bork, D. Sheer, S. Blencke, S. Steyrer, U. Wellbrock, D. Bevec, A. Ullrich, and C. Wallasch Genomics (February 2001)
to imported by jschultz on Jul 21, 2011, 4:10 PM
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Anopheles gambiae pilot gene discovery project: identification of mosquito innate immunity genes from expressed sequence tags generated from immune-competent cell lines
G. Dimopoulos, T. L. Casavant, S. Chang, T. Scheetz, C. Roberts, M. Donohue, J. Schultz, V. Benes, P. Bork, W. Ansorge, M. B. Soares, and F. C. Kafatos Proc. Natl. Acad. Sci. U.S.A. (June 2000)
to imported by jschultz on Jul 21, 2011, 4:10 PM
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More than 1,000 putative new human signalling proteins revealed by EST data mining
J. Schultz, T. Doerks, C. P. Ponting, R. R. Copley, and P. Bork Nat. Genet. (June 2000)
to imported by jschultz and 1 other user on Jul 21, 2011, 4:10 PM
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