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Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma.
José Caldas, Nils Gehlenborg, Eeva Kettunen, Ali Faisal, Mikko Rönty, Andrew G. Nicholson, Sakari Knuutila, Alvis Brazma, and Samuel Kaski Bioinformatics 28(2):246-253 (2012)
to dblp by dblp on Jan 17, 2012, 12:00 AM
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Efficient Identification of Regular Expressions from Representative Examples.
Alvis Brazma COLT, page 236-242. ACM, (1993)
to dblp by dblp and 1 other user on Dec 23, 2011, 12:00 AM
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Models of Inductive Synthesis.
Efim B. Kinber, and Alvis Brazma J. Log. Program. 9(2&3):221-233 (1990)
to dblp by dblp on Dec 1, 2011, 12:00 AM
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Generalized Regular Expressions-A Language for Synthesis of Programs with Braching in Loops.
Alvis Brazma, and Efim B. Kinber Theor. Comput. Sci. 46(3):175-195 (1986)
to dblp by dblp on Sep 7, 2011, 12:00 AM
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An open letter to the scientific journals.
Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, and John Quackenbush Bioinformatics 18(11):1409 (2002)
to dblp by dblp on Jun 29, 2011, 12:00 AM
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On the Importance of Standardisation in Life Sciences.
Alvis Brazma Bioinformatics 17(1):113-114 (2001)
to dblp by dblp on Jun 29, 2011, 12:00 AM
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ArrayExpress - a public repository for microarray gene expression data at the EBI.
Alvis Brazma, Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, and Susanna-Assunta Sansone Nucleic Acids Research 31(1):68-71 (2003)
to dblp by dblp and 1 other user on Jun 29, 2011, 12:00 AM
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The European Bioinformatics Institute's data resources.
Catherine Brooksbank, Evelyn Camon, Midori A. Harris, Michele Magrane, Maria Jesus Martin, Nicola J. Mulder, Claire O'Donovan, Helen E. Parkinson, Mary Ann Tuli, Rolf Apweiler, Ewan Birney, Alvis Brazma, Kim Henrick, Rodrigo Lopez, Guenter Stoesser, Peter Stoehr, and Graham Cameron Nucleic Acids Research 31(1):43-50 (2003)
to dblp by dblp and 1 other user on Jun 29, 2011, 12:00 AM
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Pattern Discovery in Biosequences.
Alvis Brazma, Inge Jonassen, Jaak Vilo, and Esko Ukkonen ICGI, volume 1433 of Lecture Notes in Computer Science, page 257-270. Springer, (1998)
to dblp by dblp on Jun 16, 2011, 12:00 AM
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Noise-Tolerant Efficient Inductive Synthesis of Regular Expressions from Good Examples.
Alvis Brazma, and Karlis Cerans New Generation Comput. 15(1):105-140 (1997)
to dblp by dblp on May 25, 2011, 12:00 AM
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ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments.
Helen E. Parkinson, Ugis Sarkans, Nikolay Kolesnikov, Niran Abeygunawardena, Tony Burdett, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Emma Hastings, Ele Holloway, Natalja Kurbatova, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Gabriella Rustici, Anjan Sharma, Eleanor Williams, Tomasz Adamusiak, Marco Brandizi, Nataliya Sklyar, and Alvis Brazma Nucleic Acids Research 39(Database-Issue):1002-1004 (2011)
to dblp by dblp on Apr 15, 2011, 12:00 AM
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Microarray gene expression data analysis - a beginner's guide.
Helen C. Causton, John Quackenbush, and Alvis Brazma Blackwell, (2003)
to dblp by dblp and 1 other user on Apr 15, 2011, 12:00 AM
BibTeX
Gene Expression Atlas at the European Bioinformatics Institute.
Misha Kapushesky, Ibrahim Emam, Ele Holloway, Pavel Kurnosov, Andrey Zorin, James Malone, Gabriella Rustici, Eleanor Williams, Helen E. Parkinson, and Alvis Brazma Nucleic Acids Research 38(Database-Issue):690-698 (2010)
to dblp by dblp on Apr 12, 2011, 12:00 AM
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A pipeline for RNA-seq data processing and quality assessment.
Angela Goncalves, Andrew Tikhonov, Alvis Brazma, and Misha Kapushesky Bioinformatics 27(6):867-869 (2011)
to dblp by dblp on Mar 27, 2011, 12:00 AM
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Current approaches to gene regulatory network modelling
Thomas Schlitt, and Alvis Brazma BMC Bioinformatics 8(Suppl 6):S9 (2007)
to networks by lantiq and 2 other users on Mar 14, 2011, 1:06 AM
BibTeX
SAIL - a software system for sample and phenotype availability across biobanks and cohorts.
Mikhail Gostev, Julio Fernandez-Banet, Johan Rung, Joern Dietrich, Inga Prokopenko, Samuli Ripatti, Mark I. McCarthy, Alvis Brazma, and Maria Krestyaninova Bioinformatics 27(4):589-591 (2011)
to dblp by dblp on Feb 11, 2011, 12:00 AM
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An information retrieval perspective on visualization of gene expression data with ontological annotation.
Jaakko Peltonen, Helena Aidos, Nils Gehlenborg, Alvis Brazma, and Samuel Kaski ICASSP, page 2178-2181. IEEE, (2010)
to dblp by dblp on Nov 29, 2010, 12:00 AM
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Annotare - a tool for annotating high-throughput biomedical investigations and resulting data.
Ravi Shankar, Helen E. Parkinson, Tony Burdett, Emma Hastings, Junmin Liu, Michael Miller, Rashmi Srinivasa, Joseph White, Alvis Brazma, Gavin Sherlock, Christian J. Stoeckert Jr., and Catherine A. Ball Bioinformatics 26(19):2470-2471 (2010)
to dblp by dblp on Nov 17, 2010, 12:00 AM
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The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays.
Yevhen Vainshtein, Mayka Sanchez, Alvis Brazma, Matthias W. Hentze, Thomas Dandekar, and Martina U. Muckenthaler BMC Bioinformatics (2010)
to dblp by dblp on Jul 21, 2010, 3:41 PM
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Probabilistic retrieval and visualization of biologically relevant microarray experiments.
José Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, and Samuel Kaski BMC Bioinformatics 10(S-13):0 (2009)
to dblp by dblp and 2 other users on Jul 21, 2010, 3:41 PM
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