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publications

(17)

• Cavity Scaling: Automated Refinement of Cavity-Aware motifs in protein Function Prediction.
  Brian Y. Chen and Drew H. Bryant and Viacheslav Fofanov and David M. Kristensen and Amanda E. Cruess and Marek Kimmel and Olivier Lichtarge and Lydia E. Kavraki J. Bioinformatics and Computational Biology 5 353-382 (2007)
  to dblp by dblp on 2008-08-08 00:00:00
  | URL | BibTeX  
• Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction.
  Brian Y. Chen and Viacheslav Fofanov and Drew H. Bryant and Bradley D. Dodson and David M. Kristensen and Andreas Martin Lisewski and Marek Kimmel and Olivier Lichtarge and Lydia E. Kavraki RECOMB 500-515 (2006)
  to dblp by dblp on 2008-06-26 00:00:00
  | URL | BibTeX  
• Effect of the mutation rate and background size on the quality of pathogen identification.
  Chris Reed and Viacheslav Fofanov and Catherine Putonti and Sergei Chumakov and Tom Slezak and Yuriy Fofanov Bioinformatics 23 2665-2671 (2007)
  to dblp by dblp on 2008-01-11 00:00:00
  | URL | BibTeX  
• Developing Assays for the Detection of Influenza in Human Samples.
  Chen Feng and Catherine Putonti and Michael Quance and Stephen Huff and Andrey Belokrylov and Lennart Johnsson and Krishna Jayaraman and Michael Hogan and Yuriy Fofanov BIOCOMP 781- (2007)
  to dblp by dblp on 2007-12-14 00:00:00
  | URL | BibTeX  
• Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes.
  Aaron Skewes and Michael Quance and Catherine Putonti and Viacheslav Fofanov and Yuriy Fofanov BIOCOMP 760-766 (2007)
  to dblp by dblp on 2007-12-14 00:00:00
  | URL | BibTeX  
• Two Challenges in Genomics That Can Benefit from Petascale Platforms.
  Catherine Putonti and Meizhuo Zhang and Lennart Johnsson and Yuriy Fofanov Euro-Par Workshops 313-322 (2006)
  to dblp by dblp on 2007-09-20 00:00:00
  | URL | BibTeX  
• How independent are the appearances of n-mers in different genomes?
  Yuriy Fofanov and Yi Luo and Charles Katili and Jim Wang and Yuri Belosludtsev and Thomas Powdrill and Chetan Belapurkar and Viacheslav Fofanov and Tong-Bin Li and Sergei Chumakov and B. Montgomery Pettitt Bioinformatics 20 2421-2428 (2004)
  to dblp by dblp on 2007-09-20 00:00:00
  | URL | BibTeX  
• A parallel computing algorithm for 16S rRNA probe design.
  Dianhui Zhu and Yuriy Fofanov and Richard C. Willson and George E. Fox J. Parallel Distrib. Comput. 66 1546-1551 (2006)
  to dblp by dblp on 2007-02-27 00:00:00
  | URL | BibTeX  
• ProkProbePicker (PPP): a Fast Program to Extract 16S rRNA-Targeted Probes for Prokaryotes.
  Dianhui Zhu and Yuriy Fofanov and Richard C. Willson and George E. Fox METMBS 41-47 (2005)
  to dblp by dblp on 2006-02-15 00:00:00
  | URL | BibTeX  
• Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs.
  Brian Y. Chen and Viacheslav Fofanov and David M. Kristensen and Marek Kimmel and Olivier Lichtarge and Lydia E. Kavraki Pacific Symposium on Biocomputing (2005)
  to dblp by dblp on 2005-05-31 00:00:00
  | URL | BibTeX