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Neighborhood communication paradigm to increase scalability in large-scale dynamic scientific applications.
Aleksandr Ovcharenko, Daniel Ibanez, Fabien Delalondre, Onkar Sahni, Kenneth E. Jansen, Christopher D. Carothers, and Mark S. Shephard Parallel Computing 38(3):140-156 (2012)
to dblp by dblp on Feb 6, 2012, 12:00 AM
URL | BibTeX
Structure of Proximal and Distant Regulatory Elements in the Human Genome.
Ivan Ovcharenko ISBRA, volume 6053 of Lecture Notes in Computer Science, page 125. Springer, (2010)
to dblp by dblp on Jul 21, 2010, 4:04 PM
URL | BibTeX
Subdomain communication to increase scalability in large-scale scientific applications.
Aleksandr Ovcharenko, Onkar Sahni, Christopher D. Carothers, Kenneth E. Jansen, and Mark S. Shephard ICS, page 497-498. ACM, (2009)
to dblp by dblp on Jul 21, 2010, 4:00 PM
URL | BibTeX
Array2BIO: from microarray expression data to functional annotation of co-regulated genes.
Gabriela G. Loots, Patrick S. G. Chain, Shalini Mabery, Amy Rasley, Emilio Garcia, and Ivan Ovcharenko BMC Bioinformatics (2006)
to dblp by dblp on Nov 10, 2009, 12:00 AM
URL | BibTeX
DiRE: identifying distant regulatory elements of co-expressed genes.
Valer Gotea, and Ivan Ovcharenko Nucleic Acids Research 36(Web-Server-Issue):133-139 (2008)
to dblp by dblp on Aug 25, 2009, 12:00 AM
URL | BibTeX
Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements.
Leila Taher, and Ivan Ovcharenko Bioinformatics 25(5):578-584 (2009)
to dblp by dblp on Jun 22, 2009, 12:00 AM
URL | BibTeX
Dcode.org anthology of comparative genomic tools.
Gabriela G. Loots, and Ivan Ovcharenko Nucleic Acids Research 33(Web-Server-Issue):56-64 (2005)
to dblp by dblp on Feb 1, 2007, 12:00 AM
URL | BibTeX
Identifying synonymous regulatory elements in vertebrate genomes.
Ivan Ovcharenko, and Marcelo A. Nobrega Nucleic Acids Research 33(Web-Server-Issue):403-407 (2005)
to dblp by dblp on Feb 1, 2007, 12:00 AM
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ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes.
Gabriela G. Loots, and Ivan Ovcharenko Bioinformatics 23(1):122-124 (2007)
to dblp by dblp on Jan 29, 2007, 12:00 AM
URL | BibTeX
rVISTA 2.0: evolutionary analysis of transcription factor binding sites.
Gabriela G. Loots, and Ivan Ovcharenko Nucleic Acids Research 32(Web-Server-Issue):217-221 (2004)
to dblp by dblp on Sep 21, 2004, 12:00 AM
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ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.
Ivan Ovcharenko, Marcelo A. Nobrega, Gabriela G. Loots, and Lisa Stubbs Nucleic Acids Research 32(Web-Server-Issue):280-286 (2004)
to dblp by dblp on Sep 21, 2004, 12:00 AM
URL | BibTeX
CREME: Cis-Regulatory Module Explorer for the human genome.
Roded Sharan, Asa Ben-Hur, Gabriela G. Loots, and Ivan Ovcharenko Nucleic Acids Research 32(Web-Server-Issue):253-256 (2004)
to dblp by dblp on Sep 21, 2004, 12:00 AM
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CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments.
Roded Sharan, Ivan Ovcharenko, Asa Ben-Hur, and Richard M. Karp ISMB Supplement of Bioinformatics, page 283-291. (2003)
to dblp by dblp on Jul 15, 2003, 12:00 AM
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