- DILS, volume 2994 of Lecture Notes in Computer Science, page 156-171. Springer, (2004)
- Bioinformatics 19(18):2442-2447 (2003)
- Bioinformatics 15(10):832-836 (1999)
- Bioinformatics 19(16):2112-2121 (2003)
- Bioinformatics 27(12):1725-1726 (2011)
- Journal of Computer-Aided Molecular Design 15(9):811-817 (2001)
- Nucleic Acids Research 39(Database-Issue):377-382 (2011)
- Nucleic Acids Research 39(Database-Issue):960-967 (2011)
- Nucleic Acids Research 39(Database-Issue):1049-1054 (2011)
- Nucleic Acids Research 39(Database-Issue):1060-1066 (2011)
- Nucleic Acids Research 38(Database-Issue):237-243 (2010)
- Algorithms 2(2):692-709 (2009)
- i-com 5(1):5-11 (2006)
- Nucleic Acids Research 34(Database-Issue):678-683 (2006)
- Computational Biology and Chemistry 33(6):451-456 (2009)
- BMC Bioinformatics (2006)
- Nucleic Acids Research 37(Web-Server-Issue):571-574 (2009)
- Nucleic Acids Research 37(Database-Issue):195-200 (2009)
- Nucleic Acids Research 37(Database-Issue):291-294 (2009)
- Nucleic Acids Research 37(Database-Issue):295-299 (2009)


author