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(19)
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dblp
BioJava
imported
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The RCSB Protein Data Bank: new resources for research and education.
Peter W. Rose
,
Chunxiao Bi
,
Wolfgang Bluhm
,
Cole H. Christie
,
Dimitris Dimitropoulos
,
Shuchismita Dutta
,
Rachel Kramer Green
,
David S. Goodsell
,
Andreas Prlic
,
Martha Quesada
,
Greg B. Quinn
,
Alexander G. Ramos
,
John D. Westbrook
,
Jasmine Young
,
Christine Zardecki
,
Helen M. Berman
, and
Philip E. Bourne
.
Nucleic Acids Research
41(Database-Issue):475-482
(
2013
)
Peter W. Rose
,
Chunxiao Bi
,
Wolfgang Bluhm
,
Cole H. Christie
,
Dimitris Dimitropoulos
,
Shuchismita Dutta
,
Rachel Kramer Green
,
David S. Goodsell
,
Andreas Prlic
,
Martha Quesada
,
Greg B. Quinn
,
Alexander G. Ramos
,
John D. Westbrook
,
Jasmine Young
,
Christine Zardecki
,
Helen M. Berman
, and
Philip E. Bourne
.
Nucleic Acids Research
41(Database-Issue):475-482
(
2013
)
4 months and 14 days ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
BioJava: an open-source framework for bioinformatics.
Richard C. G. Holland
,
Thomas A. Down
,
Matthew R. Pocock
,
Andreas Prlic
,
David Huen
,
Keith James
,
Sylvain Foisy
,
Andreas Dräger
,
Andy Yates
,
Michael L. Heuer
, and
Mark J. Schreiber
.
Bioinformatics
24(18):2096-2097
(
2008
)
Richard C. G. Holland
,
Thomas A. Down
,
Matthew R. Pocock
,
Andreas Prlic
,
David Huen
,
Keith James
,
Sylvain Foisy
,
Andreas Dräger
,
Andy Yates
,
Michael L. Heuer
, and
Mark J. Schreiber
.
Bioinformatics
24(18):2096-2097
(
2008
)
7 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
BioJava: an open-source framework for bioinformatics in 2012.
Andreas Prlic
,
Andrew Yates
,
Spencer Bliven
,
Peter W. Rose
,
Julius Jacobsen
,
Peter V. Troshin
,
Mark Chapman
,
Jianjiong Gao
,
Chuan Hock Koh
,
Sylvain Foisy
,
Richard R. C. Holland
,
Gediminas Rimsa
,
Michael L. Heuer
,
Hannes Brandstätter-Müller
,
Philip E. Bourne
, and
Scooter Willis
.
Bioinformatics
28(20):2693-2695
(
2012
)
Andreas Prlic
,
Andrew Yates
,
Spencer Bliven
,
Peter W. Rose
,
Julius Jacobsen
,
Peter V. Troshin
,
Mark Chapman
,
Jianjiong Gao
,
Chuan Hock Koh
,
Sylvain Foisy
,
Richard R. C. Holland
,
Gediminas Rimsa
,
Michael L. Heuer
,
Hannes Brandstätter-Müller
,
Philip E. Bourne
, and
Scooter Willis
.
Bioinformatics
28(20):2693-2695
(
2012
)
7 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Will Widgets and Semantic Tagging Change Computational Biology?
Philip E. Bourne
,
Bojan Beran
,
Chunxiao Bi
,
Wolfgang Bluhm
,
Roland Dunbrack
,
Andreas Prlic
,
Greg B. Quinn
,
Peter W. Rose
,
Raship Shah
,
Wendy Tao
,
Brian Weitzner
, and
Benjamin T. Yukich
.
PLoS Computational Biology
(
2010
)
Philip E. Bourne
,
Bojan Beran
,
Chunxiao Bi
,
Wolfgang Bluhm
,
Roland Dunbrack
,
Andreas Prlic
,
Greg B. Quinn
,
Peter W. Rose
,
Raship Shah
,
Wendy Tao
,
Brian Weitzner
, and
Benjamin T. Yukich
.
PLoS Computational Biology
(
2010
)
a year and 2 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
BioJava: an open-source framework for bioinformatics
R. C. G. Holland
,
T. A. Down
,
M. Pocock
,
A. Prlic
,
D. Huen
,
K. James
,
S. Foisy
,
A. Drager
,
A. Yates
,
M. Heuer
, and
M. J. Schreiber
.
Bioinformatics
24(18):2096-2097
(
2008
)
R. C. G. Holland
,
T. A. Down
,
M. Pocock
,
A. Prlic
,
D. Huen
,
K. James
,
S. Foisy
,
A. Drager
,
A. Yates
,
M. Heuer
, and
M. J. Schreiber
.
Bioinformatics
24(18):2096-2097
(
2008
)
a year and 5 months ago
by
fairybasslet
1
BioJava
BioJava
URL
DOI
TeX
Ensembl 2006.
Ewan Birney
,
T. Daniel Andrews
,
Mario Cáccamo
,
Yuan Chen
,
Laura Clarke
,
Guy Coates
,
Tony Cox
,
Fiona Cunningham
,
Val Curwen
,
Tim Cutts
,
Thomas Down
,
Richard Durbin
,
Xosé M. Fernández-Suarez
,
Paul Flicek
,
Stefan Gräf
,
Martin Hammond
,
Javier Herrero
,
Kevin L. Howe
,
Vivek Iyer
,
K. Jekosch
,
Andreas Kähäri
,
Arek Kasprzyk
,
Damian Keefe
,
Felix Kokocinski
,
Eugene Kulesha
,
D. London
,
Ian Longden
,
Craig Melsopp
,
Patrick Meidl
,
Bert Overduin
,
Anne Parker
,
Glenn Proctor
,
Andreas Prlic
,
Mark Rae
,
Daniel Rios
,
Seth Redmond
,
Michael Schuster
,
I. Sealy
,
Stephen M. J. Searle
,
Jessica Severin
,
Guy Slater
,
Damian Smedley
,
James Smith
,
Arne Stabenau
,
Jim Stalker
,
S. Trevanion
,
Abel Ureta-Vidal
,
Jan Vogel
,
Simon White
,
Cara Woodwark
, and
Tim J. P. Hubbard
.
Nucleic Acids Research
34(Database-Issue):556-561
(
2006
)
Ewan Birney
,
T. Daniel Andrews
,
Mario Cáccamo
,
Yuan Chen
,
Laura Clarke
,
Guy Coates
,
Tony Cox
,
Fiona Cunningham
,
Val Curwen
,
Tim Cutts
,
Thomas Down
,
Richard Durbin
,
Xosé M. Fernández-Suarez
,
Paul Flicek
,
Stefan Gräf
,
Martin Hammond
,
Javier Herrero
,
Kevin L. Howe
,
Vivek Iyer
,
K. Jekosch
,
Andreas Kähäri
,
Arek Kasprzyk
,
Damian Keefe
,
Felix Kokocinski
,
Eugene Kulesha
,
D. London
,
Ian Longden
,
Craig Melsopp
,
Patrick Meidl
,
Bert Overduin
,
Anne Parker
,
Glenn Proctor
,
Andreas Prlic
,
Mark Rae
,
Daniel Rios
,
Seth Redmond
,
Michael Schuster
,
I. Sealy
,
Stephen M. J. Searle
,
Jessica Severin
,
Guy Slater
,
Damian Smedley
,
James Smith
,
Arne Stabenau
,
Jim Stalker
,
S. Trevanion
,
Abel Ureta-Vidal
,
Jan Vogel
,
Simon White
,
Cara Woodwark
, and
Tim J. P. Hubbard
.
Nucleic Acids Research
34(Database-Issue):556-561
(
2006
)
a year and 8 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
WILMA - automated annotation of protein sequences.
Andreas Prlic
,
Francisco S. Domingues
,
Peter Lackner
, and
Manfred J. Sippl
.
Bioinformatics
20(1):127-128
(
2004
)
Andreas Prlic
,
Francisco S. Domingues
,
Peter Lackner
, and
Manfred J. Sippl
.
Bioinformatics
20(1):127-128
(
2004
)
a year and 11 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
The RCSB Protein Data Bank: redesigned web site and web services.
Peter W. Rose
,
Bojan Beran
,
Chunxiao Bi
,
Wolfgang Bluhm
,
Dimitris Dimitropoulos
,
David S. Goodsell
,
Andreas Prlic
,
Martha Quesada
,
Greg B. Quinn
,
John D. Westbrook
,
Jasmine Young
,
Benjamin T. Yukich
,
Christine Zardecki
,
Helen M. Berman
, and
Philip E. Bourne
.
Nucleic Acids Research
39(Database-Issue):392-401
(
2011
)
Peter W. Rose
,
Bojan Beran
,
Chunxiao Bi
,
Wolfgang Bluhm
,
Dimitris Dimitropoulos
,
David S. Goodsell
,
Andreas Prlic
,
Martha Quesada
,
Greg B. Quinn
,
John D. Westbrook
,
Jasmine Young
,
Benjamin T. Yukich
,
Christine Zardecki
,
Helen M. Berman
, and
Philip E. Bourne
.
Nucleic Acids Research
39(Database-Issue):392-401
(
2011
)
2 years and a month ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Ensembl 2007.
Tim J. P. Hubbard
,
Bronwen L. Aken
,
Kathryn Beal
,
Benoit Ballester
,
Mario Cáccamo
,
Yuan Chen
,
Laura Clarke
,
Guy Coates
,
Fiona Cunningham
,
Tim Cutts
,
Thomas Down
,
S. C. Dyer
,
Stephen Fitzgerald
,
Julio Fernandez-Banet
,
Stefan Gräf
,
Syed Haider
,
Martin Hammond
,
Javier Herrero
,
Richard C. G. Holland
,
Kevin L. Howe
,
Kerstin Howe
,
Nathan Johnson
,
Andreas Kähäri
,
Damian Keefe
,
Felix Kokocinski
,
Eugene Kulesha
,
Daniel Lawson
,
Ian Longden
,
Craig Melsopp
,
Karine Megy
,
Patrick Meidl
,
Bert Overduin
,
Anne Parker
,
Andreas Prlic
,
S. Rice
,
Daniel Rios
,
Michael Schuster
,
I. Sealy
,
Jessica Severin
,
Guy Slater
,
Damian Smedley
,
Giulietta Spudich
,
S. Trevanion
,
Albert J. Vilella
,
Jan Vogel
,
Simon White
,
M. Wood
,
Tony Cox
,
Val Curwen
,
Richard Durbin
,
Xosé M. Fernández-Suarez
,
Paul Flicek
,
Arek Kasprzyk
,
Glenn Proctor
,
Stephen M. J. Searle
,
James Smith
,
Abel Ureta-Vidal
, and
Ewan Birney
.
Nucleic Acids Research
35(Database-Issue):610-617
(
2007
)
Tim J. P. Hubbard
,
Bronwen L. Aken
,
Kathryn Beal
,
Benoit Ballester
,
Mario Cáccamo
,
Yuan Chen
,
Laura Clarke
,
Guy Coates
,
Fiona Cunningham
,
Tim Cutts
,
Thomas Down
,
S. C. Dyer
,
Stephen Fitzgerald
,
Julio Fernandez-Banet
,
Stefan Gräf
,
Syed Haider
,
Martin Hammond
,
Javier Herrero
,
Richard C. G. Holland
,
Kevin L. Howe
,
Kerstin Howe
,
Nathan Johnson
,
Andreas Kähäri
,
Damian Keefe
,
Felix Kokocinski
,
Eugene Kulesha
,
Daniel Lawson
,
Ian Longden
,
Craig Melsopp
,
Karine Megy
,
Patrick Meidl
,
Bert Overduin
,
Anne Parker
,
Andreas Prlic
,
S. Rice
,
Daniel Rios
,
Michael Schuster
,
I. Sealy
,
Jessica Severin
,
Guy Slater
,
Damian Smedley
,
Giulietta Spudich
,
S. Trevanion
,
Albert J. Vilella
,
Jan Vogel
,
Simon White
,
M. Wood
,
Tony Cox
,
Val Curwen
,
Richard Durbin
,
Xosé M. Fernández-Suarez
,
Paul Flicek
,
Arek Kasprzyk
,
Glenn Proctor
,
Stephen M. J. Searle
,
James Smith
,
Abel Ureta-Vidal
, and
Ewan Birney
.
Nucleic Acids Research
35(Database-Issue):610-617
(
2007
)
2 years and a month ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Ensembl 2008.
Paul Flicek
,
Bronwen L. Aken
,
Kathryn Beal
,
Benoit Ballester
,
Mario Cáccamo
,
Yuan Chen
,
Laura Clarke
,
Guy Coates
,
Fiona Cunningham
,
Tim Cutts
,
Thomas A. Down
,
S. C. Dyer
,
T. Eyre
,
Stephen Fitzgerald
,
Julio Fernandez-Banet
,
Stefan Gräf
,
Syed Haider
,
Martin Hammond
,
Richard C. G. Holland
,
Kevin L. Howe
,
Kerstin Howe
,
Nathan Johnson
,
Andrew M. Jenkinson
,
Andreas Kähäri
,
Damian Keefe
,
Felix Kokocinski
,
Eugene Kulesha
,
Daniel Lawson
,
Ian Longden
,
Karine Megy
,
Patrick Meidl
,
Bert Overduin
,
Anne Parker
,
Bethan Pritchard
,
Andreas Prlic
,
S. Rice
,
Daniel Rios
,
Michael Schuster
,
I. Sealy
,
Guy Slater
,
Damian Smedley
,
Giulietta Spudich
,
S. Trevanion
,
Albert J. Vilella
,
Jan Vogel
,
Simon White
,
M. Wood
,
Ewan Birney
,
Tony Cox
,
Val Curwen
,
Richard Durbin
,
Xosé M. Fernández-Suarez
,
Javier Herrero
,
Tim J. P. Hubbard
,
Arek Kasprzyk
,
Glenn Proctor
,
James Smith
,
Abel Ureta-Vidal
, and
Stephen M. J. Searle
.
Nucleic Acids Research
36(Database-Issue):707-714
(
2008
)
Paul Flicek
,
Bronwen L. Aken
,
Kathryn Beal
,
Benoit Ballester
,
Mario Cáccamo
,
Yuan Chen
,
Laura Clarke
,
Guy Coates
,
Fiona Cunningham
,
Tim Cutts
,
Thomas A. Down
,
S. C. Dyer
,
T. Eyre
,
Stephen Fitzgerald
,
Julio Fernandez-Banet
,
Stefan Gräf
,
Syed Haider
,
Martin Hammond
,
Richard C. G. Holland
,
Kevin L. Howe
,
Kerstin Howe
,
Nathan Johnson
,
Andrew M. Jenkinson
,
Andreas Kähäri
,
Damian Keefe
,
Felix Kokocinski
,
Eugene Kulesha
,
Daniel Lawson
,
Ian Longden
,
Karine Megy
,
Patrick Meidl
,
Bert Overduin
,
Anne Parker
,
Bethan Pritchard
,
Andreas Prlic
,
S. Rice
,
Daniel Rios
,
Michael Schuster
,
I. Sealy
,
Guy Slater
,
Damian Smedley
,
Giulietta Spudich
,
S. Trevanion
,
Albert J. Vilella
,
Jan Vogel
,
Simon White
,
M. Wood
,
Ewan Birney
,
Tony Cox
,
Val Curwen
,
Richard Durbin
,
Xosé M. Fernández-Suarez
,
Javier Herrero
,
Tim J. P. Hubbard
,
Arek Kasprzyk
,
Glenn Proctor
,
James Smith
,
Abel Ureta-Vidal
, and
Stephen M. J. Searle
.
Nucleic Acids Research
36(Database-Issue):707-714
(
2008
)
2 years and a month ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Integration of open access literature into the RCSB Protein Data Bank using BioLit.
Andreas Prlic
,
Marco A. Martinez
,
Dimitris Dimitropoulos
,
Bojan Beran
,
Benjamin T. Yukich
,
Peter W. Rose
,
Philip E. Bourne
, and
J. Lynn Fink
.
BMC Bioinformatics
(
2010
)
Andreas Prlic
,
Marco A. Martinez
,
Dimitris Dimitropoulos
,
Bojan Beran
,
Benjamin T. Yukich
,
Peter W. Rose
,
Philip E. Bourne
, and
J. Lynn Fink
.
BMC Bioinformatics
(
2010
)
2 years and 10 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Integrating biological data - the Distributed Annotation System.
Andrew M. Jenkinson
,
Mario Albrecht
,
Ewan Birney
,
Hagen Blankenburg
,
Thomas Down
,
Robert D. Finn
,
Henning Hermjakob
,
Tim J. P. Hubbard
,
Rafael C. Jimenez
,
Philip Jones
,
Andreas Kähäri
,
Eugene Kulesha
,
José R. Macías
,
Gabrielle A. Reeves
, and
Andreas Prlic
.
BMC Bioinformatics
(
2008
)
Andrew M. Jenkinson
,
Mario Albrecht
,
Ewan Birney
,
Hagen Blankenburg
,
Thomas Down
,
Robert D. Finn
,
Henning Hermjakob
,
Tim J. P. Hubbard
,
Rafael C. Jimenez
,
Philip Jones
,
Andreas Kähäri
,
Eugene Kulesha
,
José R. Macías
,
Gabrielle A. Reeves
, and
Andreas Prlic
.
BMC Bioinformatics
(
2008
)
3 years and 11 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
Integrating sequence and structural biology with DAS.
Andreas Prlic
,
Thomas A. Down
,
Eugene Kulesha
,
Robert D. Finn
,
Andreas Kähäri
, and
Tim J. P. Hubbard
.
BMC Bioinformatics
(
2007
)
Andreas Prlic
,
Thomas A. Down
,
Eugene Kulesha
,
Robert D. Finn
,
Andreas Kähäri
, and
Tim J. P. Hubbard
.
BMC Bioinformatics
(
2007
)
3 years and 11 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
The Protein Feature Ontology: a tool for the unification of protein feature annotations.
Gabrielle A. Reeves
,
Karen Eilbeck
,
Michele Magrane
,
Claire O'Donovan
,
Luisa Montecchi-Palazzi
,
Midori A. Harris
,
Sandra E. Orchard
,
Rafael C. Jimenez
,
Andreas Prlic
,
Tim J. P. Hubbard
,
Henning Hermjakob
, and
Janet M. Thornton
.
Bioinformatics
24(23):2767-2772
(
2008
)
Gabrielle A. Reeves
,
Karen Eilbeck
,
Michele Magrane
,
Claire O'Donovan
,
Luisa Montecchi-Palazzi
,
Midori A. Harris
,
Sandra E. Orchard
,
Rafael C. Jimenez
,
Andreas Prlic
,
Tim J. P. Hubbard
,
Henning Hermjakob
, and
Janet M. Thornton
.
Bioinformatics
24(23):2767-2772
(
2008
)
3 years and 11 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
DASMI: exchanging, annotating and assessing molecular interaction data.
Hagen Blankenburg
,
Robert D. Finn
,
Andreas Prlic
,
Andrew M. Jenkinson
,
Fidel Ramírez
,
Dorothea Emig
,
Sven-Eric Schelhorn
,
Joachim Büch
,
Thomas Lengauer
, and
Mario Albrecht
.
Bioinformatics
25(10):1321-1328
(
2009
)
Hagen Blankenburg
,
Robert D. Finn
,
Andreas Prlic
,
Andrew M. Jenkinson
,
Fidel Ramírez
,
Dorothea Emig
,
Sven-Eric Schelhorn
,
Joachim Büch
,
Thomas Lengauer
, and
Mario Albrecht
.
Bioinformatics
25(10):1321-1328
(
2009
)
3 years and 11 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
The Distributed Annotation System for integration of biological data
Andreas Prlic
,
Ewan Birney
,
Tony Cox
,
Thomas Down
,
Rob Finn
,
Stefan Gräf
,
David Jackson
,
Andreas Kahari
,
Eugene Kulesha
,
Roger Pettett
,
James Smith
,
Jim Stalker
, and
Tim Hubbard
.
Proc. of the 3rd International Workshop on Data Integration in the Life Sciences DILS,
(
2006
)
Andreas Prlic
,
Ewan Birney
,
Tony Cox
,
Thomas Down
,
Rob Finn
,
Stefan Gräf
,
David Jackson
,
Andreas Kahari
,
Eugene Kulesha
,
Roger Pettett
,
James Smith
,
Jim Stalker
, and
Tim Hubbard
.
Proc. of the 3rd International Workshop on Data Integration in the Life Sciences DILS,
(
2006
)
5 years and 8 months ago
by
tkirsten
1
imported
imported
URL
DOI
TeX
The Distributed Annotation System for Integration of Biological Data.
Andreas Prlic
,
Ewan Birney
,
Tony Cox
,
Thomas A. Down
,
Robert D. Finn
,
Stefan Gräf
,
David K. Jackson
,
Andreas Kähäri
,
Eugene Kulesha
,
Roger Pettett
,
James Smith
,
Jim Stalker
, and
Tim J. P. Hubbard
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DILS,
volume 4075 of Lecture Notes in Computer Science,
page 195-203.
Springer,
(
2006
)
Andreas Prlic
,
Ewan Birney
,
Tony Cox
,
Thomas A. Down
,
Robert D. Finn
,
Stefan Gräf
,
David K. Jackson
,
Andreas Kähäri
,
Eugene Kulesha
,
Roger Pettett
,
James Smith
,
Jim Stalker
, and
Tim J. P. Hubbard
.
DILS,
volume 4075 of Lecture Notes in Computer Science,
page 195-203.
Springer,
(
2006
)
5 years and 11 months ago
by
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SISYPHUS - structural alignments for proteins with non-trivial relationships.
Antonina Andreeva
,
Andreas Prlic
,
Tim J. P. Hubbard
, and
Alexey G. Murzin
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Nucleic Acids Research
35(Database-Issue):253-259
(
2007
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Antonina Andreeva
,
Andreas Prlic
,
Tim J. P. Hubbard
, and
Alexey G. Murzin
.
Nucleic Acids Research
35(Database-Issue):253-259
(
2007
)
6 years and 4 months ago
by
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1
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Adding Some SPICE to DAS.
Andreas Prlic
,
Thomas A. Down
, and
Tim J. P. Hubbard
.
ECCB/JBI,
page 41.
(
2005
)
Andreas Prlic
,
Thomas A. Down
, and
Tim J. P. Hubbard
.
ECCB/JBI,
page 41.
(
2005
)
6 years and 11 months ago
by
dblp
1
dblp
dblp
URL
DOI
TeX
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