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ArrayExpress - a public repository for microarray gene expression data at the EBI.
Alvis Brazma, Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, and Susanna-Assunta Sansone Nucleic Acids Research 31(1):68-71 (2003)
to dblp by dblp and 1 other user on Jun 29, 2011, 12:00 AM
URL | BibTeX
Incorporating Hypothetical Knowledge into the Process of Inductive Synthesis.
Janis Barzdins, and Ugis Sarkans ALT, volume 1160 of Lecture Notes in Computer Science, page 156-168. Springer, (1996)
to dblp by dblp on Jun 27, 2011, 12:00 AM
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Using Attribute Grammars for Description of Inductive Inference Search Space.
Ugis Sarkans, and Janis Barzdins ALT, volume 1501 of Lecture Notes in Computer Science, page 400-408. Springer, (1998)
to dblp by dblp on Jun 17, 2011, 12:00 AM
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ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments.
Helen E. Parkinson, Ugis Sarkans, Nikolay Kolesnikov, Niran Abeygunawardena, Tony Burdett, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Emma Hastings, Ele Holloway, Natalja Kurbatova, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Gabriella Rustici, Anjan Sharma, Eleanor Williams, Tomasz Adamusiak, Marco Brandizi, Nataliya Sklyar, and Alvis Brazma Nucleic Acids Research 39(Database-Issue):1002-1004 (2011)
to dblp by dblp on Apr 15, 2011, 12:00 AM
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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
Tim F. Rayner, Philippe Rocca-Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert Jr., Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen E. Parkinson, Ugis Sarkans, Catherine A. Ball, and Alvis Brazma BMC Bioinformatics (2006)
to dblp by dblp on Nov 10, 2009, 12:00 AM
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A System for Information Management in BioMedical Studies--SIMBioMS
Maria Krestyaninova, Andris Zarins, Juris Viksna, Natalja Kurbatova, Peteris Rucevskis, Sudeshna Guha Neogi, Mike Gostev, Teemu Perheentupa, Juha Knuuttila, Amy Barrett, Ilkka Lappalainen, Johan Rung, Karlis Podnieks, Ugis Sarkans, Mark I McCarthy, and Alvis Brazma Bioinformatics 25(20):2768-2769 (2009)
to opensource proj:0915 software web by wnpxrz and 2 other users on Oct 19, 2009, 10:09 PM
URL | DOI | BibTeX
A System for Information Management in BioMedical Studies--SIMBioMS
Maria Krestyaninova, Andris Zarins, Juris Viksna, Natalja Kurbatova, Peteris Rucevskis, Sudeshna Guha Neogi, Mike Gostev, Teemu Perheentupa, Juha Knuuttila, Amy Barrett, Ilkka Lappalainen, Johan Rung, Karlis Podnieks, Ugis Sarkans, Mark I McCarthy, and Alvis Brazma Bioinformatics 25(20):2768-2769 (2009)
to information_management by penkib and 2 other users on Oct 19, 2009, 4:26 AM
URL | DOI | BibTeX
A System for Information Management in BioMedical Studies - SIMBioMS.
Maria Krestyaninova, Andris Zarins, Juris Viksna, Natalja Kurbatova, Peteris Rucevskis, Sudeshna Guha Neogi, Mike Gostev, Teemu Perheentupa, Juha Knuuttila, Amy Barrett, Ilkka Lappalainen, Johan Rung, Karlis Podnieks, Ugis Sarkans, Mark I. McCarthy, and Alvis Brazma Bioinformatics 25(20):2768-2769 (2009)
to dblp by dblp and 2 other users on Oct 9, 2009, 12:00 AM
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ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression.
Helen E. Parkinson, Misha Kapushesky, Nikolay Kolesnikov, Gabriella Rustici, Mohammadreza Shojatalab, Niran Abeygunawardena, Hugo Berube, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Ele Holloway, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Tim F. Rayner, Faisal Ibne Rezwan, Anjan Sharma, Eleanor Williams, Xiangqun Zheng Bradley, Tomasz Adamusiak, Marco Brandizi, Tony Burdett, Richard Coulson, Maria Krestyaninova, Pavel Kurnosov, Eamonn Maguire, Sudeshna Guha Neogi, Philippe Rocca-Serra, Susanna-Assunta Sansone, Nataliya Sklyar, Mengyao Zhao, Ugis Sarkans, and Alvis Brazma Nucleic Acids Research 37(Database-Issue):868-872 (2009)
to dblp by dblp on Aug 26, 2009, 12:00 AM
URL | BibTeX
ArrayExpress - a public repository for microarray gene expression data at the EBI.
Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Niran Abeygunawardena, Sergio Contrino, Richard Coulson, Anna Farne, Gonzalo Garcia Lara, Ele Holloway, Misha Kapushesky, P. Lilja, Gaurab Mukherjee, Ahmet Oezcimen, Tim F. Rayner, Philippe Rocca-Serra, Anjan Sharma, Susanna-Assunta Sansone, and Alvis Brazma Nucleic Acids Research 33(Database-Issue):553-555 (2005)
to dblp by dblp and 1 other user on Aug 25, 2009, 12:00 AM
URL | BibTeX
ArrayExpress - a public database of microarray experiments and gene expression profiles.
Helen E. Parkinson, Misha Kapushesky, Mohammadreza Shojatalab, Niran Abeygunawardena, Richard Coulson, Anna Farne, Ele Holloway, N. Kolesnykov, P. Lilja, Margus Lukk, Roby Mani, Tim F. Rayner, Anjan Sharma, E. William, Ugis Sarkans, and Alvis Brazma Nucleic Acids Research 35(Database-Issue):747-750 (2007)
to dblp by dblp on Aug 25, 2009, 12:00 AM
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Wrestling with SUMO and bio-ontologies
Christian Stoeckert, Catherine Ball, Alvis Brazma, Ryan Brinkman, Helen Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Mervi Heiskanen, Frank Holstege, Norman Morrison, Helen Parkinson, John Quackenbush, Philippe Rocca-Serra, Susanna-Assunta Sansone, Ugis Sarkans, Gavin Sherlock, Robert Stevens, Chris Taylor, Ronald Taylor, Patricia Whetzel, and Joseph White Nat Biotech 24(1):21--22 (January 2006)
by cbrewster on Aug 17, 2009, 12:47 AM
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PASSIM - an open source software system for managing information in biomedical studies.
Juris Viksna, Edgars Celms, Martins Opmanis, Karlis Podnieks, Peteris Rucevskis, Andris Zarins, Amy Barrett, Sudeshna Guha Neogi, Maria Krestyaninova, Mark I. McCarthy, Alvis Brazma, and Ugis Sarkans BMC Bioinformatics (2007)
to dblp by dblp on Jun 30, 2009, 12:00 AM
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The ArrayExpress gene expression database: a software engineering and implementation perspective.
Ugis Sarkans, Helen E. Parkinson, Gonzalo Garcia Lara, Ahmet Oezcimen, Anjan Sharma, Niran Abeygunawardena, Sergio Contrino, Ele Holloway, Philippe Rocca-Serra, Gaurab Mukherjee, Mohammadreza Shojatalab, Misha Kapushesky, Susanna-Assunta Sansone, Anna Farne, Tim F. Rayner, and Alvis Brazma Bioinformatics 21(8):1495-1501 (2005)
to dblp by dblp on Jun 22, 2009, 12:00 AM
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The Functional Genomics Experiment model FuGE: an extensible framework for standards in functional genomics
Andrew R. Jones, Michael Miller, Ruedi Aebersold, Rolf Apweiler, Catherine A. Ball, Alvis Brazma, James Degreef, Nigel Hardy, Henning Hermjakob, Simon J. Hubbard, Peter Hussey, Mark Igra, Helen Jenkins, Randall K. Julian, Kent Laursen, Stephen G. Oliver, Norman W. Paton, Susanna-Assunta Sansone, Ugis Sarkans, Christian J. Stoeckert, Chris F. Taylor, Patricia L. Whetzel, Joseph A. White, Paul Spellman, and Angel Pizarro Nat Biotech 25(10):1127--1133 (October 2007)
to bioinformatics, data-integration, data-standards, fuge, xml by earthfare on May 19, 2009, 6:00 PM
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Minimum information about a microarray experiment MIAME -- Towards standards for microarray data
Alvis Brazma, Pascal Hingamp, John Quackenbush, Gavin Sherlock, Paul Spellman, Chris Stoeckert, John Aach, Wilhelm Ansorge, Catherine A. Ball, Helen C. Causton, Terry Gaasterland, Patrick Glenisson, Frank C. P. Holstege, Irene F. Kim, Victor M. Markowitz, John C. Matese, Helen Parkinson, Alan Robinson, Ugis Sarkans, Steffen Schulze-Kremer, Jason Stewart, Ronald Taylor, Jaak Vilo, and Martin Vingron Nature Genetics (2001)
to imported by tkirsten on Oct 23, 2007, 1:35 PM
BibTeX
ArrayExpress -- A public repository for microarray gene expression data at the EBI
Alvis Brazma, Helen Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, and Susanna-Assunta Sansone Nucleic Acids Research 31(1):68--71 (2003)
to imported by tkirsten and 1 other user on Oct 23, 2007, 1:35 PM
URL | BibTeX
ArrayExpress -- A public repository for microarray gene expression data at the EBI
H. Parkinson, U. Sarkans, M. Shojatalab, N. Abeygunawardena, S. Contrino, R. Coulson, A. Farne, G. Garcia Lara, E. Holloway, M. Kapushesky, P. Lilja, G. Mukherjee, A. Oezcimen, T. Rayner, P. Rocca-Serra, A. Sharma, S. Sansone, and A. Brazma Nucleic Acids Research (2005)
to imported by tkirsten and 1 other user on Oct 23, 2007, 1:35 PM
URL | BibTeX
Expression Profiler: next generation - an online platform for analysis of microarray data.
Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, and Alvis Brazma Nucleic Acids Research 32(Web-Server-Issue):465-470 (2004)
to dblp by dblp on Sep 21, 2004, 12:00 AM
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Towards Efficient Inductive Synthesis of Expressions from Input/Output Examples.
Janis Barzdins, Guntis Barzdins, Kalvis Apsitis, and Ugis Sarkans ALT, volume 744 of Lecture Notes in Computer Science, page 59-72. Springer, (1993)
to dblp by dblp on Jan 31, 2002, 12:00 AM
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