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The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration
Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J. Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J. Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Nigam Shah, Patricia L. Whetzel, and Suzanna Lewis Nature Biotechnology 25(11):1251--1255 (November 2007)
by gergie and 1 other user on Dec 12, 2011, 7:00 PM
DOI | BibTeX
RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies.
Elisabetta Manduchi, Gregory R. Grant, H. He, Junmin Liu, Matthew D. Mailman, Angel D. Pizarro, Patricia L. Whetzel, and Christian J. Stoeckert Jr. Bioinformatics 20(4):452-459 (2004)
to dblp by dblp on Sep 14, 2011, 12:00 AM
URL | BibTeX
Preparing for the aftermath: Using emotional agents in game-based training for disaster response.
Donna Djordjevich, Patrick G. Xavier, Michael L. Bernard, Jonathan Whetzel, Matthew R. Glickman, and Stephen J. Verzi CIG, page 266-275. IEEE, (2008)
to dblp by dblp on Sep 10, 2011, 12:00 AM
URL | BibTeX
The Biomedical Resource Ontology BRO to enable resource discovery in clinical and translational research.
Jessica D. Tenenbaum, Patricia L. Whetzel, Kent Anderson, Charles D. Borromeo, Ivo D. Dinov, Davera Gabriel, Beth A. Kirschner, Barbara Mirel, Timothy D. Morris, Natasha Fridman Noy, Csongor Nyulas, David Rubenson, Paul R. Saxman, Harpreet Singh, Nancy Whelan, Zach Wright, Brian D. Athey, Michael J. Becich, Geoffrey S. Ginsburg, Mark A. Musen, Kevin A. Smith, Alice F. Tarantal, Daniel L. Rubin, and Peter Lyster Journal of Biomedical Informatics 44(1):137-145 (2011)
to dblp by dblp on Aug 8, 2011, 12:00 AM
URL | BibTeX
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.
Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., and Patricia L. Whetzel Nucleic Acids Research 31(1):212-215 (2003)
to dblp by dblp on Jun 29, 2011, 12:00 AM
URL | BibTeX
Overcoming the ontology enrichment bottleneck with Quick Term Templates.
Philippe Rocca-Serra, Alan Ruttenberg, Martin J. O'Connor, Patricia L. Whetzel, Daniel Schober, Jay Greenbaum, Mélanie Courtot, Ryan R. Brinkman, Susanna-Assunta Sansone, Richard H. Scheuermann, and Bjoern Peters Applied Ontology 6(1):13-22 (2011)
to dblp by dblp on Apr 16, 2011, 12:00 AM
URL | BibTeX
Towards BioDBcore: a community-defined information specification for biological databases.
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, and Chisato Yamasaki Nucleic Acids Research 39(Database-Issue):7-10 (2011)
to dblp by dblp on Apr 15, 2011, 12:00 AM
URL | BibTeX
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall, The OBI Consortium, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Nigam Shah, Patricia L Whetzel, and Suzanna Lewis Nature Biotechnology http:// www.obofoundry.org/ (November 2007)
to CAT CAT-DBS CAT-ONTOLOGY OBO by huiyangsfsu on Aug 29, 2010, 9:43 AM
URL | BibTeX
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Nigam Shah, Patricia L Whetzel, and Suzanna Lewis Nat Biotech 25(11):1251--1255 (November 2007)
to _toread bio-ontology by tral and 1 other user on Nov 12, 2009, 3:30 PM
URL | BibTeX
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
Tim F. Rayner, Philippe Rocca-Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert Jr., Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen E. Parkinson, Ugis Sarkans, Catherine A. Ball, and Alvis Brazma BMC Bioinformatics (2006)
to dblp by dblp on Nov 10, 2009, 12:00 AM
URL | BibTeX
Development of a distributed multi-player computer game for scientific experimentation of team training protocols.
Sen Cao Richard, Richard A. Volz, Jamison Johnson, Jonathan Whetzel, Dianxiang Xu, and Maitreyi Nanjanath The Electronic Library 22(1):43-54 (2004)
to dblp by dblp on Nov 6, 2009, 12:00 AM
URL | BibTeX
BioPortal: ontologies and integrated data resources at the click of a mouse.
Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Daniel L. Rubin, Margaret-Anne D. Storey, Christopher G. Chute, and Mark A. Musen Nucleic Acids Research 37(Web-Server-Issue):170-173 (2009)
to dblp by dblp on Aug 26, 2009, 12:00 AM
URL | BibTeX
Wrestling with SUMO and bio-ontologies
Christian Stoeckert, Catherine Ball, Alvis Brazma, Ryan Brinkman, Helen Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Mervi Heiskanen, Frank Holstege, Norman Morrison, Helen Parkinson, John Quackenbush, Philippe Rocca-Serra, Susanna-Assunta Sansone, Ugis Sarkans, Gavin Sherlock, Robert Stevens, Chris Taylor, Ronald Taylor, Patricia Whetzel, and Joseph White Nat Biotech 24(1):21--22 (January 2006)
by cbrewster on Aug 17, 2009, 12:47 AM
URL | BibTeX
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.
Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall, O. B. I. Consortium, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Nigam Shah, Patricia L Whetzel, and Suzanna Lewis Nat Biotechnol 25(11):1251--1255 (November 2007)
by cbrewster on Aug 17, 2009, 12:47 AM
URL | DOI | BibTeX
The Functional Genomics Experiment model FuGE: an extensible framework for standards in functional genomics
Andrew R. Jones, Michael Miller, Ruedi Aebersold, Rolf Apweiler, Catherine A. Ball, Alvis Brazma, James Degreef, Nigel Hardy, Henning Hermjakob, Simon J. Hubbard, Peter Hussey, Mark Igra, Helen Jenkins, Randall K. Julian, Kent Laursen, Stephen G. Oliver, Norman W. Paton, Susanna-Assunta Sansone, Ugis Sarkans, Christian J. Stoeckert, Chris F. Taylor, Patricia L. Whetzel, Joseph A. White, Paul Spellman, and Angel Pizarro Nat Biotech 25(10):1127--1133 (October 2007)
to bioinformatics, data-integration, data-standards, fuge, xml by earthfare on May 19, 2009, 6:00 PM
URL | DOI | BibTeX
The MGED Ontology: a resource for semantics-based description of microarray experiments.
Patricia L. Whetzel, Helen E. Parkinson, Helen C. Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Laurence Game, Mervi Heiskanen, Norman Morrison, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris J. Taylor 0002, Joseph White, and Christian J. Stoeckert Jr. Bioinformatics 22(7):866-873 (2006)
to dblp by dblp on May 4, 2008, 12:00 AM
URL | BibTeX
The MGED ontology: A Resource for semantics-based description of microarray experiments
Patricia L. Whetzel, Helen Parkinson, Helen C. Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Laurence Game, Mervi Heiskanen, Norman Morrison, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris taylor, Joseph White, and Christian J. Stoeckert Bioinformatics 22(7):866--873 (2006)
to design experimental mged ontology by tkirsten on Oct 23, 2007, 1:35 PM
URL | BibTeX
Using Ontologies to Annotate Microarray Experiments
Patricia L. Whetzel, Helen Parkinson, Jr Stoeckert, Alan Kimmel, and Brian Oliver DNA Microarrays, Part B: Databases and Statistics (2006)
to imported by p_ansell on May 4, 2007, 5:44 AM
URL | BibTeX

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