@article{DeJongBerendsenCools99, title = {Goal neglect and inhibitory limitations: Dissociable causes of interference effects in conflict situations}, author = {R. De Jong and E. Berendsen and R. Cools}, journal = {Acta Psychologica}, pages = {379-394}, volume = {101}, year = {1999}, biburl = {http://www.bibsonomy.org/bibtex/2d1aef45a992b799e3566a71290764132/brian.mingus}, description = {CCNLab BibTeX}, keywords = {CCP JRR, attention, competence, goals, } } @inproceedings{conf/formats/BerendsenV08, title = {Compositional Abstraction in Real-Time Model Checking.}, author = {Jasper Berendsen and Frits W. Vaandrager}, booktitle = {FORMATS}, crossref = {conf/formats/2008}, editor = {Franck Cassez and Claude Jard}, pages = {233-249}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/formats/formats2008.html#BerendsenV08}, volume = {5215}, year = {2008}, biburl = {http://www.bibsonomy.org/bibtex/21c3e2286be0c065d2ce7894e386098db/dblp}, description = {dblp}, date = {2008-09-05}, ee = {http://dx.doi.org/10.1007/978-3-540-85778-5_17}, isbn = {978-3-540-85777-8}, keywords = {dblp } } @book{spc81, title = {Intermolecular forces}, author = {H. J. C. Berendsen and J. P. M. Postma and W. F. van Gunsteren and J. Hermans}, pages = {331}, publisher = {B.~Pullman ed., Reidel, Dordrecht}, year = {1981}, biburl = {http://www.bibsonomy.org/bibtex/25c8c3e5fd933cd515e933cef7a43e9fb/magdusia}, description = {phd}, keywords = {imported } } @article{berendsen84, title = {Molecular dynamics with coupling to an external bath}, author = {H. J. C. Berendsen and J. P. M. Postma and W. F. van Gunsteren and A. DiNola and J. R. Haak}, journal = {J.~Chem.~Phys.}, pages = {3684-3690}, volume = {81}, year = {1984}, biburl = {http://www.bibsonomy.org/bibtex/238ee7299764c49ec02d62b5aeaa8324b/magdusia}, description = {phd}, keywords = {imported } } @article{Berendsen1984, title = {{Molecular dynamics with coupling to an external bath}}, author = {HJC Berendsen and JPM Postma and WF van Gunsteren and A. DiNola and JR Haak}, journal = {The Journal of Chemical Physics}, pages = {3684}, publisher = {AIP}, volume = {81}, year = {1984}, biburl = {http://www.bibsonomy.org/bibtex/280eaeb56fe65d6ba6683ca03a970f2cd/sansiro}, memo = {2007.06.04, cited by Sammalkorpi2004, pdf}, serial = {080}, keywords = {imported } } @article{journals/gis/BerendsenCS07, title = {The use of GIS in reconstructing the Holocene palaeogeography of the Rhine-Meuse delta, The Netherlands.}, author = {H. J. A. Berendsen and K. M. Cohen and E. Stouthamer}, journal = {International Journal of Geographical Information Science}, number = {5}, pages = {589-602}, url = {http://dblp.uni-trier.de/db/journals/gis/gis21.html#BerendsenCS07}, volume = {21}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/25251fdc814b8bed3865145144fbd9c1a/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1080/13658810601064918}, date = {2008-02-28}, keywords = {dblp } } @manual{gmx31, title = {{GROMACS: GROningen MAchine for Chemical Simulations -- {U}ser {M}anual, Version 3.1}}, address = {Nij\-enborgh 4, 9747 AG Groningen, The Netherlands}, author = {David van der Spoel and Aldert R. van Buuren and Emile Apol and Pieter J. Meulen\-hoff and D. Peter Tieleman and Alfons L. T. M. Sij\-bers and Berk Hess and K. Anton Feenstra and Erik Lindahl and Rudi van Drunen and Herman J. C. Berendsen}, url = {http://www.gromacs.org}, year = {2001}, biburl = {http://www.bibsonomy.org/bibtex/283e279079b9bdda6cd253566f09588a1/kaigrass}, keywords = {imported } } @article{berendsen84a, title = {Molecular dynamics with coupling to a heat bath}, author = {H. J. C. Berendsen and J. P. M. Postma and W. F. van Gunsteren and A. DiNola and J. R. Haak}, journal = {J. Chem. Phys.}, pages = {3684--3690}, volume = {81}, year = {1984}, biburl = {http://www.bibsonomy.org/bibtex/29675ea7e1fb89de367bffe32b731dce1/kaigrass}, keywords = {imported } } @article{journals/jcc/SpoelLHGMB05, title = {GROMACS: Fast, flexible, and free.}, author = {David van der Spoel and Erik Lindahl and Berk Hess and Gerrit Groenhof and Alan E. Mark and Herman J. C. Berendsen}, journal = {Journal of Computational Chemistry}, number = {16}, pages = {1701-1718}, url = {http://dblp.uni-trier.de/db/journals/jcc/jcc26.html#SpoelLHGMB05}, volume = {26}, year = {2005}, biburl = {http://www.bibsonomy.org/bibtex/29cbabbf0f1eab44776cb0923aa2a6456/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1002/jcc.20291}, date = {2007-01-29}, keywords = {dblp } } @article{Berendsen1984, title = {Molecular dynamics with coupling to an external bath}, author = {H.J.C. Berendsen and J.P.M Postma and W.F. van Gunsteren and A. DiNola and J.R. Haak}, day = {15}, journal = {The Journal of Chemical Physics}, month = {Oct}, number = {8}, pages = {3684-3690}, publisher = {American Institute of Physics }, url = {http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=JCPSA6000081000008003684000001&idtype=cvips&gifs=Yes}, volume = {81}, year = {1984}, biburl = {http://www.bibsonomy.org/bibtex/254651f0a2358e16508b629d976aaf1be/keinstein}, description = {External bath for MD simulations}, keywords = {Bath Berendsen MD external } } @inproceedings{conf/qest/BerendsenJK06, title = {Probably on Time and within Budget: On Reachability in Priced Probabilistic Timed Automata.}, author = {Jasper Berendsen and David N. Jansen and Joost-Pieter Katoen}, booktitle = {QEST}, crossref = {conf/qest/2006}, pages = {311-322}, publisher = {IEEE Computer Society}, url = {http://dblp.uni-trier.de/db/conf/qest/qest2006.html#BerendsenJK06}, year = {2006}, biburl = {http://www.bibsonomy.org/bibtex/2f4b229ba75b06b541af39526310c9fec/dblp}, description = {dblp}, ee = {http://doi.ieeecomputersociety.org/10.1109/QEST.2006.43}, isbn = {0-7695-2665-9}, date = {2007-01-02}, keywords = {dblp } } @article{journals/jcc/AaltenGFBA97, title = {A comparison of techniques for calculating protein essential dynamics.}, author = {Daan M. F. van Aalten and Bert L. De Groot and John B. C. Findlay and Herman J. C. Berendsen and Andrea Amadei}, journal = {Journal of Computational Chemistry}, number = {2}, pages = {169-181}, url = {http://dblp.uni-trier.de/db/journals/jcc/jcc18.html#AaltenGFBA97}, volume = {18}, year = {1997}, biburl = {http://www.bibsonomy.org/bibtex/26e290a3eac497e552e470f9402512cdb/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1002/(SICI)1096-987X(19970130)18:2<169::AID-JCC3>3.0.CO;2-T}, date = {2006-11-02}, keywords = {dblp } } @inproceedings{conf/pdpta/DrunenTKB96, title = {The Amfisbaena: A Parallel Sup computer System Based on i860 as a Generic Platform for Molecular Dynamics Simulation.}, author = {Rudi van Drunen and Cees van Teylingen and Marcel Kroontje and Herman J. C. Berendsen}, booktitle = {PDPTA}, crossref = {conf/pdpta/1996}, editor = {Hamid R. Arabnia}, pages = {637-644}, publisher = {CSREA Press}, url = {http://dblp.uni-trier.de/db/conf/pdpta/pdpta1996.html#DrunenTKB96}, year = {1996}, biburl = {http://www.bibsonomy.org/bibtex/24ac4bd5189e72e182ab4641dd9218f4c/dblp}, description = {dblp}, isbn = {0-9648666-4-1}, date = {2004-04-21}, keywords = {dblp } } @article{journals/jcc/LensinkMB96, title = {Simultaneous integration of mixed quantum-classical systems by density matrix evolution equations using interaction representation and adaptive time step integrator.}, author = {Marc F. Lensink and Janez Mavri and Herman J. C. Berendsen}, journal = {Journal of Computational Chemistry}, number = {11}, pages = {1287-1295}, url = {http://dblp.uni-trier.de/db/journals/jcc/jcc17.html#LensinkMB96}, volume = {17}, year = {1996}, biburl = {http://www.bibsonomy.org/bibtex/288dc48ef177239bd500b47c738831dd9/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1002/(SICI)1096-987X(199608)17:11<1287::AID-JCC1>3.0.CO;2-I}, date = {2003-04-03}, keywords = {dblp } } @article{journals/jcc/HessBBF97, title = {LINCS: A linear constraint solver for molecular simulations.}, author = {Berk Hess and Henk Bekker and Herman J. C. Berendsen and Johannes G. E. M. Fraaije}, journal = {Journal of Computational Chemistry}, number = {12}, pages = {1463-1472}, url = {http://dblp.uni-trier.de/db/journals/jcc/jcc18.html#HessBBF97}, volume = {18}, year = {1997}, biburl = {http://www.bibsonomy.org/bibtex/2fbc8f15039c40b59891162d457cdfb20/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1002/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3.0.CO;2-H}, date = {2003-03-31}, keywords = {dblp } } @article{journals/jcc/LensinkMB99, title = {Simulation of slow reaction with quantum character: Neutral hydrolysis of carboxylic ester.}, author = {Marc F. Lensink and Janez Mavri and Herman J. C. Berendsen}, journal = {Journal of Computational Chemistry}, number = {8}, pages = {886-895}, url = {http://dblp.uni-trier.de/db/journals/jcc/jcc20.html#LensinkMB99}, volume = {20}, year = {1999}, biburl = {http://www.bibsonomy.org/bibtex/209590add53fd41f9eed6247b5cfd4763/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1002/(SICI)1096-987X(199906)20:8<886::AID-JCC13>3.0.CO;2-J}, date = {2003-03-27}, keywords = {dblp } } @article{journals/jcc/FeenstraHB99, title = {Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems.}, author = {K. Anton Feenstra and Berk Hess and Herman J. C. Berendsen}, journal = {Journal of Computational Chemistry}, number = {8}, pages = {786-798}, url = {http://dblp.uni-trier.de/db/journals/jcc/jcc20.html#FeenstraHB99}, volume = {20}, year = {1999}, biburl = {http://www.bibsonomy.org/bibtex/278ea79062536c820aa6f9cd4518f71e2/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1002/(SICI)1096-987X(199906)20:8<786::AID-JCC5>3.0.CO;2-B}, date = {2003-03-27}, keywords = {dblp } } @article{journals/jcamd/SchaikGB92, title = {Conformational search by potential energy annealing: Algorithm and application to cyclosporin A.}, author = {René C. van Schaik and Wilfred F. van Gunsteren and Herman J. C. Berendsen}, journal = {Journal of Computer-Aided Molecular Design}, number = {2}, pages = {97-112}, url = {http://dblp.uni-trier.de/db/journals/jcamd/jcamd6.html#SchaikGB92}, volume = {6}, year = {1992}, biburl = {http://www.bibsonomy.org/bibtex/2a553c27fe48bbe183affdf84370ceedf/dblp}, description = {dblp}, date = {2003-03-18}, keywords = {dblp } } @inproceedings{conf/coling/BerendsenLL86, title = {Computational Phonology: Merged, not Mixed.}, author = {Ego Berendsen and Simone Langeweg and Hugo van Leeuwen}, booktitle = {COLING}, pages = {612-614}, url = {http://dblp.uni-trier.de/db/conf/coling/coling1986.html#BerendsenLL86}, year = {1986}, biburl = {http://www.bibsonomy.org/bibtex/221e90bb1eea7a1b323721465f349ef7c/dblp}, description = {dblp}, date = {2002-09-17}, keywords = {dblp } }