@inproceedings{conf/cbms/CannataroGMTV05, title = {Preprocessing of Mass Spectrometry Proteomics Data on the Grid.}, author = {Mario Cannataro and Pietro Hiram Guzzi and Tommaso Mazza and Giuseppe Tradigo and Pierangelo Veltri}, booktitle = {CBMS}, crossref = {conf/cbms/2005}, pages = {549-554}, publisher = {IEEE Computer Society}, url = {http://dblp.uni-trier.de/db/conf/cbms/cbms2005.html#CannataroGMTV05}, year = {2005}, biburl = {http://www.bibsonomy.org/bibtex/26243eaa5ad3eb9c7906c489704df5b64/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1109/CBMS.2005.87}, isbn = {0-7695-2355-2}, date = {2008-08-27}, keywords = {dblp } } @article{journals/mags/CannataroGMTV06, title = {Managing ontologies for Grid computing.}, author = {Mario Cannataro and Pietro Hiram Guzzi and Tommaso Mazza and Giuseppe Tradigo and Pierangelo Veltri}, journal = {Multiagent and Grid Systems}, number = {1}, pages = {29-44}, url = {http://dblp.uni-trier.de/db/journals/mags/mags2.html#CannataroGMTV06}, volume = {2}, year = {2006}, biburl = {http://www.bibsonomy.org/bibtex/25bc298319dfe9154072dc1fbf6d920e4/dblp}, description = {dblp}, ee = {http://iospress.metapress.com/content/7ke7yvxeuhtfq7h2/}, date = {2008-08-06}, keywords = {dblp } } @inproceedings{conf/iccS/CannataroRSS08, title = {Bioinformatics' Challenges to Computer Science.}, author = {Mario Cannataro and Mathilde Romberg and Joakim Sundnes and Rodrigo Weber dos Santos}, booktitle = {ICCS (3)}, crossref = {conf/iccS/2008-3}, editor = {Marian Bubak and G. Dick van Albada and Jack Dongarra and Peter M. A. Sloot}, pages = {67-69}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/iccS/iccS2008-3.html#CannataroRSS08}, volume = {5103}, year = {2008}, biburl = {http://www.bibsonomy.org/bibtex/266935dbe5103e994ac7a742b4fa1f9fe/dblp}, description = {dblp}, date = {2008-06-30}, ee = {http://dx.doi.org/10.1007/978-3-540-69389-5_9}, isbn = {978-3-540-69388-8}, keywords = {dblp } } @inproceedings{conf/iccS/CannataroGV08, title = {IMPRECO: A Tool for Improving the Prediction of Protein Complexes.}, author = {Mario Cannataro and Pietro Hiram Guzzi and Pierangelo Veltri}, booktitle = {ICCS (3)}, crossref = {conf/iccS/2008-3}, editor = {Marian Bubak and G. Dick van Albada and Jack Dongarra and Peter M. A. Sloot}, pages = {148-157}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/iccS/iccS2008-3.html#CannataroGV08}, volume = {5103}, year = {2008}, biburl = {http://www.bibsonomy.org/bibtex/2ad9ec05b5e8788ef04fef6d1f3c4e79c/dblp}, description = {dblp}, date = {2008-06-30}, ee = {http://dx.doi.org/10.1007/978-3-540-69389-5_18}, isbn = {978-3-540-69388-8}, keywords = {dblp } } @inproceedings{conf/cbms/CannataroGV08, title = {myMCL: A Web Portal for Protein Complexes Prediction.}, author = {Mario Cannataro and Pietro Hiram Guzzi and Pierangelo Veltri}, booktitle = {CBMS}, crossref = {conf/cbms/2008}, pages = {179-184}, publisher = {IEEE Computer Society}, url = {http://dblp.uni-trier.de/db/conf/cbms/cbms2008.html#CannataroGV08}, year = {2008}, biburl = {http://www.bibsonomy.org/bibtex/281fbe6e1100db37fa68c38c4352b1f5a/dblp}, description = {dblp}, ee = {http://doi.ieeecomputersociety.org/10.1109/CBMS.2008.113}, isbn = {978-0-7695-3165-6}, date = {2008-06-24}, keywords = {dblp } } @article{Cannataro, title = {Distributed Data Mining on the Grid}, author = {M. Cannataro and D. Talia and P. Trunfio}, journal = {Future Generation Computer Systems}, number = {8}, pages = {1101--1112}, publisher = {Elsevier Science}, volume = {18}, year = {2002}, biburl = {http://www.bibsonomy.org/bibtex/2e4484eb43e4497cc785679a575a62345/kdubiq}, description = {KDubiq Blueprint}, keywords = {imported } } @inproceedings{conf/hpdc/CannataroGPRV07, title = {Semantic extraction and adaptive delivery of multimedia contents for the cultural assets.}, author = {Mario Cannataro and Lorenzo Gallucci and Adriana Pietramala and Pasquale Rullo and Pierangelo Veltri}, booktitle = {UPGRADE-CN}, crossref = {conf/hpdc/2007upgrade}, editor = {Giancarlo Fortino and Carlo Mastroianni and Guillaume Pierre}, pages = {49-56}, publisher = {ACM}, url = {http://dblp.uni-trier.de/db/conf/hpdc/upgrade2007.html#CannataroGPRV07}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/27af8bef93db307a0f926a3be75746f8e/dblp}, description = {dblp}, date = {2008-04-18}, ee = {http://doi.acm.org/10.1145/1272980.1272991}, isbn = {978-1-59593-718-6}, keywords = {dblp } } @article{journals/bib/Cannataro08, title = {Computational proteomics: management and analysis of proteomics data.}, author = {Mario Cannataro}, journal = {Briefings in Bioinformatics}, number = {2}, pages = {97-101}, url = {http://dblp.uni-trier.de/db/journals/bib/bib9.html#Cannataro08}, volume = {9}, year = {2008}, biburl = {http://www.bibsonomy.org/bibtex/28bcc035ac570054fe3e72d16e3527b33/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1093/bib/bbn011}, date = {2008-04-04}, keywords = {dblp } } @article{journals/fgcs/CannataroTTTV08, title = {SIGMCC: A system for sharing meta patient records in a Peer-to-Peer environment.}, author = {Mario Cannataro and Domenico Talia and Giuseppe Tradigo and Paolo Trunfio and Pierangelo Veltri}, journal = {Future Generation Comp. Syst.}, number = {3}, pages = {222-234}, url = {http://dblp.uni-trier.de/db/journals/fgcs/fgcs24.html#CannataroTTTV08}, volume = {24}, year = {2008}, biburl = {http://www.bibsonomy.org/bibtex/237c32ecc614810f53d92763da8df48e9/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1016/j.future.2007.06.006}, date = {2008-02-13}, keywords = {dblp } } @article{journals/concurrency/CannataroSTG92, title = {Design, implementation and evaluation of a deadlock-free routing algorithm for concurrent computers.}, author = {Mario Cannataro and Giandomenico Spezzano and Domenico Talia and E. Gallizzi}, journal = {Concurrency - Practice and Experience}, number = {2}, pages = {143-161}, url = {http://dblp.uni-trier.de/db/journals/concurrency/concurrency4.html#CannataroSTG92}, volume = {4}, year = {1992}, biburl = {http://www.bibsonomy.org/bibtex/233b49d8a8541607c58fa43981c6b88eb/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1002/cpe.4330040204}, date = {2007-11-30}, keywords = {dblp } } @article{journals/concurrency/CannataroV07, title = {MS-Analyzer: preprocessing and data mining services for proteomics applications on the Grid.}, author = {Mario Cannataro and Pierangelo Veltri}, journal = {Concurrency and Computation: Practice and Experience}, number = {15}, pages = {2047-2066}, url = {http://dblp.uni-trier.de/db/journals/concurrency/concurrency19.html#CannataroV07}, volume = {19}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/2f30658d491dc876a643cc6e2c1784005/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1002/cpe.1144}, date = {2007-11-26}, keywords = {dblp } } @inproceedings{conf/wilf/CannataroCGV07, title = {An Interactive Tool for the Management and Visualization of Mass-Spectrometry Proteomics Data.}, author = {Mario Cannataro and Giovanni Cuda and Marco Gaspari and Pierangelo Veltri}, booktitle = {WILF}, crossref = {conf/wilf/2007}, editor = {Francesco Masulli and Sushmita Mitra and Gabriella Pasi}, pages = {635-642}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/wilf/wilf2007.html#CannataroCGV07}, volume = {4578}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/2709e5fdd220e20303d49e50d81e73085/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1007/978-3-540-73400-0_81}, isbn = {978-3-540-73399-7}, date = {2007-09-03}, keywords = {dblp } } @inproceedings{conf/cbms/GuzziCGMQVC06, title = {Analysis and Classification of Proteomics Data, a Case Study.}, author = {Pietro Hiram Guzzi and Mario Cannataro and Marco Gaspari and Tommaso Mazza and Barbara Quaresima and Pierangelo Veltri and F. S. Costanzo}, booktitle = {CBMS}, crossref = {conf/cbms/2006}, pages = {913-918}, publisher = {IEEE Computer Society}, url = {http://dblp.uni-trier.de/db/conf/cbms/cbms2006.html#GuzziCGMQVC06}, year = {2006}, biburl = {http://www.bibsonomy.org/bibtex/2e84abdf4b5d5324c9a61d5437f6250d5/dblp}, description = {dblp}, ee = {http://doi.ieeecomputersociety.org/10.1109/CBMS.2006.43}, date = {2007-09-01}, keywords = {dblp } } @inproceedings{conf/ispa/CannataroV07, title = {Services, Standards, and Technologies for High Performance Computational Proteomics.}, author = {Mario Cannataro and Pierangelo Veltri}, booktitle = {ISPA Workshops}, crossref = {conf/ispa/2007w}, editor = {Parimala Thulasiraman and Xubin He and Tony Li Xu and Mieso K. Denko and Ruppa K. Thulasiram and Laurence Tianruo Yang}, pages = {404-413}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/ispa/ispa2007w.html#CannataroV07}, volume = {4743}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/2911e51861d7147362cb1171f92e29118/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1007/978-3-540-74767-3_42}, isbn = {978-3-540-74766-6}, date = {2007-08-21}, keywords = {dblp } } @article{Cannataro2005, title = {Modeling and designing a proteomics application on PROTEUS.}, author = {M. Cannataro and G. Cuda and P. Veltri}, journal = {Methods Inf Med}, number = {2}, pages = {221--226}, url = {http://dx.doi.org/10.1267/METH05020221}, volume = {44}, year = {2005}, biburl = {http://www.bibsonomy.org/bibtex/2b254dc0e3f7501dec7adc72bce920f1f/p_ansell}, description = {Bioinformatics Workflow Systems}, abstract = {OBJECTIVES: Biomedical applications, such as analysis and management of mass spectrometry proteomics experiments, involve heterogeneous platforms and knowledge, massive data sets, and complex algorithms. Main requirements of such applications are semantic modeling of the experiments and data analysis, as well as high performance computational platforms. In this paper we propose a software platform allowing to model and execute biomedical applications on the Grid. METHODS: Computational Grids offer the required computational power, whereas ontologies and workflow help to face the heterogeneity of biomedical applications. In this paper we propose the use of domain ontologies and workflow techniques for modeling biomedical applications, whereas Grid middleware is responsible for high performance execution. As a case study, the modeling of a proteomics experiment is discussed. RESULTS: The main result is the design and first use of PROTEUS, a Grid-based problem-solving environment for biomedical and bioinformatics applications. CONCLUSION: To manage the complexity of biomedical experiments, ontologies help to model applications and to identify appropriate data and algorithms, workflow techniques allow to combine the elements of such applications in a systematic way. Finally, translation of workflow into execution plans allows the exploitation of the computational power of Grids. Along this direction, in this paper we present PROTEUS discussing a real case study in the proteomics domain.}, doi = {10.1267/METH05020221}, owner = {peter}, pii = {05020221}, pmid = {15924180}, timestamp = {2007.04.18 12:34}, keywords = {Algorithms;_Database_Management_Systems;_Databases Genetic;_Humans;_Information_Storage_and_Retrieval;_Internationality;_Internet;_Italy;_Medical_Informatics_Applications;_Problem_Solving;_Program_Development;_Proteomics;_Systems_Biology;_Systems_Integration } } @article{journals/ipm/VeltriCT07, title = {Sharing mass spectrometry data in a grid-based distributed proteomics laboratory.}, author = {Pierangelo Veltri and Mario Cannataro and Giuseppe Tradigo}, journal = {Inf. Process. Manage.}, number = {3}, pages = {577-591}, url = {http://dblp.uni-trier.de/db/journals/ipm/ipm43.html#VeltriCT07}, volume = {43}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/2b24b2ca8db8d57341b927bc7ac4e2980/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1016/j.ipm.2006.10.008}, date = {2007-02-13}, keywords = {dblp } } @article{journals/fgcs/CannataroGMTV07, title = {Using ontologies for preprocessing and mining spectra data on the Grid.}, author = {Mario Cannataro and Pietro Hiram Guzzi and Tommaso Mazza and Giuseppe Tradigo and Pierangelo Veltri}, journal = {Future Generation Comp. Syst.}, number = {1}, pages = {55-60}, url = {http://dblp.uni-trier.de/db/journals/fgcs/fgcs23.html#CannataroGMTV07}, volume = {23}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/28175a73f50f440a4c23eee0a48719542/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1016/j.future.2006.04.011}, date = {2007-02-13}, keywords = {dblp } } @inproceedings{conf/skg/CannataroGMV05, title = {MS-Analyzer: Intelligent Preprocessing, Management, and Data Mining Analysis of Mass Spectrometry Data on the Grid.}, author = {Mario Cannataro and Pietro Hiram Guzzi and Tommaso Mazza and Pierangelo Veltri}, booktitle = {SKG}, crossref = {conf/skg/2005}, pages = {22}, publisher = {IEEE Computer Society}, url = {http://dblp.uni-trier.de/db/conf/skg/skg2005.html#CannataroGMV05}, year = {2005}, biburl = {http://www.bibsonomy.org/bibtex/2c6487828c61a39f094c8be8b0d5ab393/dblp}, description = {dblp}, ee = {http://doi.ieeecomputersociety.org/10.1109/SKG.2005.92}, isbn = {0-7695-2534-2}, date = {2007-01-19}, keywords = {dblp } } @inproceedings{conf/skg/CannataroV06, title = {A Grid Service for Pattern Extraction from Mass Spectrometry Data.}, author = {Mario Cannataro and Pierangelo Veltri}, booktitle = {SKG}, crossref = {conf/skg/2006}, pages = {36}, publisher = {IEEE Computer Society}, url = {http://dblp.uni-trier.de/db/conf/skg/skg2006.html#CannataroV06}, year = {2006}, biburl = {http://www.bibsonomy.org/bibtex/25512dc9000f07c769fa2ec4b1c50795e/dblp}, description = {dblp}, ee = {http://doi.ieeecomputersociety.org/10.1109/SKG.2006.6}, date = {2007-01-19}, keywords = {dblp } } @inproceedings{conf/ispa/CannataroV06, title = {A Grid Service Based on Suffix Trees for Pattern Extraction from Mass Spectrometry Proteomics Data.}, author = {Mario Cannataro and Pierangelo Veltri}, booktitle = {ISPA Workshops}, crossref = {conf/ispa/2006w}, editor = {Geyong Min and Beniamino Di Martino and Laurence Tianruo Yang and Minyi Guo and Gudula RĂ¼nger}, pages = {658-667}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/ispa/ispa2006w.html#CannataroV06}, volume = {4331}, year = {2006}, biburl = {http://www.bibsonomy.org/bibtex/2fc721ff7f4eacd6c72b66dc952752925/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1007/11942634_68}, isbn = {3-540-49860-5}, date = {2006-11-20}, keywords = {dblp } }