@article{journals/bioinformatics/DaoWCELS11,
  added-at = {2011-06-23T00:00:00.000+0200},
  author = {Dao, Phuong and Wang, Kendric and Collins, Colin and Ester, Martin and Lapuk, Anna and Sahinalp, Süleyman Cenk},
  biburl = {http://www.bibsonomy.org/bibtex/20376c027a2eb6b5cae72a9f732481542/dblp},
  ee = {http://dx.doi.org/10.1093/bioinformatics/btr245},
  interhash = {f8f5a21e4309ae2a9aabe0632e6fdc4c},
  intrahash = {0376c027a2eb6b5cae72a9f732481542},
  journal = {Bioinformatics [ISMB/ECCB]},
  keywords = {dblp},
  number = 13,
  pages = {205-213},
  title = {Optimally discriminative subnetwork markers predict response to chemotherapy.},
  url = {http://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics27.html#DaoWCELS11},
  volume = 27,
  year = 2011
}

@article{journals/bioinformatics/McPhersonWHHHLVSCS11,
  added-at = {2011-05-31T00:00:00.000+0200},
  author = {McPherson, Andrew and Wu, Chunxiao and Hajirasouliha, Iman and Hormozdiari, Fereydoun and Hach, Faraz and Lapuk, Anna and Volik, Stanislav and Shah, Sohrab and Collins, Colin and Sahinalp, Süleyman Cenk},
  biburl = {http://www.bibsonomy.org/bibtex/20764a9526e6f22aa14ce1bb49ec54de0/dblp},
  ee = {http://dx.doi.org/10.1093/bioinformatics/btr184},
  interhash = {155cef86ba0669ee54003af889453c22},
  intrahash = {0764a9526e6f22aa14ce1bb49ec54de0},
  journal = {Bioinformatics},
  keywords = {dblp},
  number = 11,
  pages = {1481-1488},
  title = {Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.},
  url = {http://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics27.html#McPhersonWHHHLVSCS11},
  volume = 27,
  year = 2011
}

@article{Neve06,
  added-at = {2010-01-26T20:35:53.000+0100},
  author = {Neve, Richard M and Chin, Koei and Fridlyand, Jane and Yeh, Jennifer and Baehner, Frederick L and Fevr, Tea and Clark, Laura and Bayani, Nora and Coppe, Jean-Philippe and Tong, Frances and Speed, Terry and Spellman, Paul T and DeVries, Sandy and Lapuk, Anna and Wang, Nick J and Kuo, Wen-Lin and Stilwell, Jackie L and Pinkel, Daniel and Albertson, Donna G and Waldman, Frederic M and McCormick, Frank and Dickson, Robert B and Johnson, Michael D and Lippman, Marc and Ethier, Stephen and Gazdar, Adi and Gray, Joe W},
  biburl = {http://www.bibsonomy.org/bibtex/23fdb473edd5d22bacd9dfed4aa1903b8/denilw},
  doi = {10.1016/j.ccr.2006.10.008},
  file = {article:../Cell Lines/A collection of breast cancer cell lines for
	the study of functionally distinct cancer subtypes.pdf:pdf},
  interhash = {346351f5c69b335d0e53b9ea746fa962},
  intrahash = {3fdb473edd5d22bacd9dfed4aa1903b8},
  journal = {Cancer Cell},
  keywords = {imported},
  number = 6,
  pages = {515-27},
  pmid = {17157791},
  title = {A collection of breast cancer cell lines for the study of functionally
	distinct cancer subtypes.},
  volume = 10,
  year = 2006
}

@article{journals/bioinformatics/PurdomSRCLS08,
  added-at = {2009-06-30T00:00:00.000+0200},
  author = {Purdom, E. and Simpson, Ken M. and Robinson, Mark D. and Conboy, J. G. and Lapuk, A. V. and Speed, Terence P.},
  biburl = {http://www.bibsonomy.org/bibtex/208d692df458b1f938059b4a0ae48d2dd/dblp},
  date = {2009-06-30},
  description = {dblp},
  ee = {http://dx.doi.org/10.1093/bioinformatics/btn284},
  interhash = {5ad9ad1f1076670ccd41cc37f05e7ef3},
  intrahash = {08d692df458b1f938059b4a0ae48d2dd},
  journal = {Bioinformatics},
  keywords = {dblp},
  number = 15,
  pages = {1707-1714},
  title = {FIRMA: a method for detection of alternative splicing from exon array data.},
  url = {http://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics24.html#PurdomSRCLS08},
  volume = 24,
  year = 2008
}

@article{260,
  abstract = {Recent studies suggest that thousands of genes may contribute to
             breast cancer pathophysiologies when deregulated by genomic or
             epigenomic events. Here, we describe a model ``system'' to appraise
             the functional contributions of these genes to breast cancer
             subsets. In general, the recurrent genomic and transcriptional
             characteristics of 51 breast cancer cell lines mirror those of 145
             primary breast tumors, although some significant differences are
             documented. The cell lines that comprise the system also exhibit
             the substantial genomic, transcriptional, and biological
             heterogeneity found in primary tumors. We show, using Trastuzumab
             (Herceptin) monotherapy as an example, that the system can be used
             to identify molecular features that predict or indicate response to
             targeted therapies or other physiological perturbations.},
  added-at = {2008-10-17T17:04:38.000+0200},
  author = {Neve, R.M. and Chin, K. and Fridlyand, J. and Yeh, J. and Baehner, F.L. and Fevr, T. and Clark, L. and Bayani, N. and Coppe, J.P. and Tong, F. and Speed, T. and Spellman, P.T. and DeVries, S. and Lapuk, A. and Wang, N.J. and Kuo, W.L. and Stilwell, J.L. and Pinkel, D. and Albertson, D.G. and Waldman, F.M. and McCormick, F. and Dickson, R.B. and Johnson, M.D. and Lippman, M. and Ethier, S. and Gazdar, A. and Gray, J.W.},
  biburl = {http://www.bibsonomy.org/bibtex/2e01881e32ea27d97d05fff62470c0810/biobibs_matthew},
  id = {info:sici/1535-6108(2006)10<515:ACOBCC>2.0.CO;2-0,
             info:doi/10.1016/j.ccr.2006.10.008, info:pmid/17157791},
  interhash = {346351f5c69b335d0e53b9ea746fa962},
  intrahash = {e01881e32ea27d97d05fff62470c0810},
  issn = {1535-6108},
  journal = {Cancer Cell},
  keywords = {imported},
  number = 6,
  pages = {515--527},
  title = {A collection of breast cancer cell lines for the study of
             functionally distinct cancer subtypes},
  volume = 10,
  year = 2006
}