@article{jger_appa_2007, title = {The AppA and PpsR proteins from Rhodobacter sphaeroides can establish a redox-dependent signal chain but fail to transmit blue-light signals in other bacteria}, author = {Andreas Jäger and Stephan Braatsch and Kerstin Haberzettl and Sebastian Metz and Lisa Osterloh and Yuchen Han and Gabriele Klug}, journal = {Journal of bacteriology}, month = {March}, note = {PMID: 17209035}, pages = {2274-82}, volume = {189}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/2d09486188bc04d8a07c7ef5a470fbac6/mikromolbio}, abstract = {The AppA protein of Rhodobacter sphaeroides has the unique ability to sense and transmit redox and light signals. In response to decreasing oxygen tension, AppA antagonizes the transcriptional regulator PpsR, which represses the expression of photosynthesis genes, including the puc operon. This mechanism, which is based on direct protein-protein interaction, is prevented by blue-light absorption of the BLUF domain located in the N-terminal part of AppA. In order to test whether AppA and PpsR are sufficient to transmit redox and light signals, we expressed these proteins in three different bacterial species and monitored oxygen- and blue-light-dependent puc expression either directly or by using a luciferase-based reporter construct. The AppA/PpsR system could mediate redox-dependent gene expression in the alphaproteobacteria Rhodobacter capsulatus and Paracoccus denitrificans but not in the gammaproteobacterium Escherichia coli. Analysis of a prrA mutant strain of R. sphaeroides strongly suggests that light-dependent gene expression requires a balanced interplay of the AppA/PpsR system with the PrrA response regulator. Therefore, the AppA/PpsR system was unable to establish light signaling in other bacteria. Based on our data, we present a model for the interdependence of AppA/PpsR signaling and the PrrA transcriptional activator.}, issn = {00219193}, keywords = {Bacterial Bacterial_Proteins DNA-Binding_Proteins Escherichia_coli Flavoproteins Gene_Expression_Regulation Light Microbial Oxidation-Reduction Oxygen Paracoccus_denitrificans Photoreceptors Photosynthesis Repressor_Proteins Rhodobacter_capsulatus Rhodobacter_sphaeroides Signal_Transduction Trans-Activators } } @article{Anderson1993b, title = {A note on maximum likelihood estimation in the first-order Gaussian moving average model}, author = {T. W. Anderson and R. P. Metz}, day = {19}, journal = {Statistics \& Probability Letters}, month = {Feb}, number = {3}, pages = {205--211}, url = {http://www.sciencedirect.com/science/article/B6V1D-45FJY79-K/1/60eaf035efd232bda3dfb697dfb9921d}, volume = {16}, year = {1993}, biburl = {http://www.bibsonomy.org/bibtex/2546179aa1f24fa85b4e25deddcfd1421/smicha}, keywords = {Moving average model } } @article{Wilke1972, title = {Rezensionen}, author = {J. Wilke and K. Reinisch and J. Metz and G. Enderlein}, journal = {Statistics}, number = {5}, pages = {401--403}, publisher = {Taylor \& Francis}, url = {http://www.informaworld.com/10.1080/02331887208801096}, volume = {3}, year = {1972}, biburl = {http://www.bibsonomy.org/bibtex/2306ad12208b493120552a4541986b72a/smicha}, issn = {0233-1888}, keywords = {imported } } @article{Hambly1998, title = {The homogenization problem for the Vicsek set}, author = {B. M. Hambly and V. Metz}, day = {15}, journal = {Stochastic Processes and their Applications}, month = {Aug}, number = {2}, pages = {167--190}, url = {http://www.sciencedirect.com/science/article/B6V1B-3V576TN-W/1/58d8c6c956edbe071e8a225f27b849d5}, volume = {76}, year = {1998}, biburl = {http://www.bibsonomy.org/bibtex/21dd4f07d9aaf2b386d723d6f992dbe3b/smicha}, description = {Stochastic Processes and their Applications}, keywords = {Homogenization } } @article{Metz2006, title = {Feed-forward chains of recurrent attractor neural networks with finite dilution near saturation}, author = {F. L. Metz and W. K. Theumann}, day = {01}, journal = {Physica A: Statistical Mechanics and its Applications}, month = {Aug}, number = {1}, pages = {273--286}, url = {http://www.sciencedirect.com/science/article/B6TVG-4J9MRG0-1/1/20cbebdd7f638092ff5c28c480cfbc88}, volume = {368}, year = {2006}, biburl = {http://www.bibsonomy.org/bibtex/2b74525f052b5b0b6ff4c618d168cd6b3/smicha}, description = {Physica A}, keywords = {Layered neural recurrent works } } @article{journals/corr/cs-SE-0310001, title = {A Performance Analysis Tool for Nokia Mobile Phone Software}, author = {Edu Metz and Raimondas Lencevicius}, journal = {CoRR}, note = {informal publication}, url = {http://dblp.uni-trier.de/db/journals/corr/corr0310.html#cs-SE-0310001}, volume = {cs.SE/0310001}, year = {2003}, biburl = {http://www.bibsonomy.org/bibtex/22197482ff508190c20e5c318098cbaec/dblp}, description = {dblp}, ee = {http://arxiv.org/abs/cs.SE/0310001}, date = {2008-01-02}, keywords = {dblp } } @article{journals/corr/cs-SE-0302033, title = {Experimental Software Schedulability Estimation For Varied Processor Frequencies}, author = {Sampsa Fabritius and Raimondas Lencevicius and Edu Metz and Alexander Ran}, journal = {CoRR}, note = {informal publication}, url = {http://dblp.uni-trier.de/db/journals/corr/corr0302.html#cs-SE-0302033}, volume = {cs.SE/0302033}, year = {2003}, biburl = {http://www.bibsonomy.org/bibtex/2a3d99fa469c660b225a3051ae94b3c01/dblp}, description = {dblp}, ee = {http://arxiv.org/abs/cs.SE/0302033}, date = {2008-01-02}, keywords = {dblp } } @article{journals/corr/cs-SE-0201028, title = {Software Validation using Power Profiles}, author = {Raimondas Lencevicius and Edu Metz and Alexander Ran}, journal = {CoRR}, note = {informal publication}, url = {http://dblp.uni-trier.de/db/journals/corr/corr0201.html#cs-SE-0201028}, volume = {cs.SE/0201028}, year = {2002}, biburl = {http://www.bibsonomy.org/bibtex/2d52fe23eedf6d2375b049429ab1ff2d4/dblp}, description = {dblp}, ee = {http://arxiv.org/abs/cs.SE/0201028}, date = {2008-01-02}, keywords = {dblp } } @article{journals/corr/cs-SE-0109019, title = {Tracing Execution of Software for Design Coverage}, author = {Raimondas Lencevicius and Edu Metz and Alexander Ran}, journal = {CoRR}, note = {informal publication}, url = {http://dblp.uni-trier.de/db/journals/corr/corr0109.html#cs-SE-0109019}, volume = {cs.SE/0109019}, year = {2001}, biburl = {http://www.bibsonomy.org/bibtex/2362df8f53d49aee41b7c26db63073d06/dblp}, description = {dblp}, ee = {http://arxiv.org/abs/cs.SE/0109019}, date = {2008-01-02}, keywords = {dblp } } @article{journals/corr/cs-PF-0307058, title = {Efficient Instrumentation for Performance Profiling}, author = {Edu Metz and Raimondas Lencevicius}, journal = {CoRR}, note = {informal publication}, url = {http://dblp.uni-trier.de/db/journals/corr/corr0307.html#cs-PF-0307058}, volume = {cs.PF/0307058}, year = {2003}, biburl = {http://www.bibsonomy.org/bibtex/2ce606e90b87144eabcb3703868930312/dblp}, description = {dblp}, ee = {http://arxiv.org/abs/cs.PF/0307058}, date = {2008-01-02}, keywords = {dblp } }