@article{journals/bioinformatics/MazurieBSB08,
	title = {Phylogenetic distances are encoded in networks of interacting pathways.},
	author = {Aurélien Mazurie and Danail Bonchev and Benno Schwikowski and Gregory A. Buck},
	journal = {Bioinformatics},
	number = {22},
	pages = {2579-2585},
	url = {http://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics24.html#MazurieBSB08},
	volume = {24},
	year = {2008},
	biburl = {http://www.bibsonomy.org/bibtex/2cf89148ef70c81daf76a54f5f9d1f55c/dblp},
	description = {dblp},
	ee = {http://dx.doi.org/10.1093/bioinformatics/btn503}, date = {2008-11-05},
	keywords = {dblp }
}

@article{journals/bioinformatics/GarciaSCFJSA07,
	title = {GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring.},
	author = {Olivier Garcia and Cosmin Saveanu and Melissa S. Cline and Micheline Fromont-Racine and Alain Jacquier and Benno Schwikowski and Tero Aittokallio},
	journal = {Bioinformatics},
	number = {3},
	pages = {394-396},
	url = {http://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics23.html#GarciaSCFJSA07},
	volume = {23},
	year = {2007},
	biburl = {http://www.bibsonomy.org/bibtex/2f2f5baaa1785d1c7f4c81717b71088aa/dblp},
	description = {dblp},
	ee = {http://dx.doi.org/10.1093/bioinformatics/btl605}, date = {2007-04-25},
	keywords = {dblp }
}

@article{journals/bib/AittokallioS06,
	title = {Graph-based methods for analysing networks in cell biology.},
	author = {Tero Aittokallio and Benno Schwikowski},
	journal = {Briefings in Bioinformatics},
	number = {3},
	pages = {243-255},
	url = {http://dblp.uni-trier.de/db/journals/bib/bib7.html#AittokallioS06},
	volume = {7},
	year = {2006},
	biburl = {http://www.bibsonomy.org/bibtex/2b0bd4a1337f7777a6434bad89de84ca0/dblp},
	description = {dblp},
	ee = {http://dx.doi.org/10.1093/bib/bbl022}, date = {2007-04-25},
	keywords = {dblp }
}

@article{journals/bmcbi/ReissATSG05,
	title = {Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection.},
	author = {David J. Reiss and Iliana Avila-Campillo and Vesteinn Thorsson and Benno Schwikowski and Timothy Galitski},
	journal = {BMC Bioinformatics},
	pages = {154},
	url = {http://dblp.uni-trier.de/db/journals/bmcbi/bmcbi6.html#ReissATSG05},
	volume = {6},
	year = {2005},
	biburl = {http://www.bibsonomy.org/bibtex/2f42fbbed0149b1699aed3c427a6be234/dblp},
	description = {dblp},
	ee = {http://dx.doi.org/10.1186/1471-2105-6-154}, date = {2006-05-17},
	keywords = {dblp }
}

@inproceedings{conf/gcb/SchwikowskiV96,
	title = {A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats.},
	author = {Benno Schwikowski and Martin Vingron},
	booktitle = {German Conference on Bioinformatics - Selected Papers},
	crossref = {conf/gcb/1996},
	editor = {Ralf Hofestädt and Thomas Lengauer and Markus Löffler and Dietmar Schomburg},
	pages = {115-124},
	publisher = {Springer},
	series = {Lecture Notes in Computer Science},
	url = {http://dblp.uni-trier.de/db/conf/gcb/gcb1996.html#SchwikowskiV96},
	volume = {1278},
	year = {1996},
	biburl = {http://www.bibsonomy.org/bibtex/227c3c82aacd712714c8515f32542a05d/dblp},
	description = {dblp},
	isbn = {3-540-63370-7}, date = {2005-02-04},
	keywords = {dblp }
}

@inproceedings{conf/gcb/SchwikowskiV96a,
	title = {Attacking Generalized tree Alignment by a Deferred Path Heuristic.},
	author = {Benno Schwikowski and Martin Vingron},
	booktitle = {German Conference on Bioinformatics},
	pages = {302-304},
	url = {http://dblp.uni-trier.de/db/conf/gcb/gcb1996p.html#SchwikowskiV96a},
	year = {1996},
	biburl = {http://www.bibsonomy.org/bibtex/2fb4d7d4310f2329ebba4be0bbbd388a9/dblp},
	description = {dblp},
	date = {2005-02-04},
	keywords = {dblp }
}

@article{journals/jcb/Ben-DorHKSSY04,
	title = {Towards Optimally Multiplexed Applications of Universal Arrays.},
	author = {Amir Ben-Dor and Tzvika Hartman and Richard M. Karp and Benno Schwikowski and Roded Sharan and Zohar Yakhini},
	journal = {Journal of Computational Biology},
	number = {2/3},
	pages = {476-492},
	url = {http://dblp.uni-trier.de/db/journals/jcb/jcb11.html#Ben-DorHKSSY04},
	volume = {11},
	year = {2004},
	biburl = {http://www.bibsonomy.org/bibtex/2ecdff55924442af0125f740b16932b35/dblp},
	description = {dblp},
	ee = {http://dx.doi.org/10.1089/1066527041410373}, date = {2004-11-17},
	keywords = {dblp }
}

@article{journals/jcb/Ben-DorKSS03,
	title = {The Restriction Scaffold Problem.},
	author = {Amir Ben-Dor and Richard M. Karp and Benno Schwikowski and Ron Shamir},
	journal = {Journal of Computational Biology},
	number = {3/4},
	pages = {385-398},
	url = {http://dblp.uni-trier.de/db/journals/jcb/jcb10.html#Ben-DorKSS03},
	volume = {10},
	year = {2003},
	biburl = {http://www.bibsonomy.org/bibtex/22492aa6ba9d47b41d464f5f8b8dc4c89/dblp},
	description = {dblp},
	ee = {http://dx.doi.org/10.1089/10665270360688084}, date = {2004-09-13},
	keywords = {dblp }
}

@inproceedings{conf/ismb/ReissS04,
	title = {Predicting protein-peptide interactions via a network-based motif sampler.},
	author = {David J. Reiss and Benno Schwikowski},
	booktitle = {ISMB/ECCB (Supplement of Bioinformatics)},
	crossref = {conf/ismb/2004},
	pages = {274-282},
	url = {http://dblp.uni-trier.de/db/conf/ismb/ismb2004.html#ReissS04},
	year = {2004},
	biburl = {http://www.bibsonomy.org/bibtex/2515d835f7f3e5b48bb2f074e9fa97587/dblp},
	description = {dblp},
	ee = {http://dx.doi.org/10.1093/bioinformatics/bth922}, date = {2004-09-03},
	keywords = {dblp }
}

@inproceedings{conf/recomb/Ben-DorHSSY03,
	title = {Towards optimally multiplexed applications of universal DNA tag systems.},
	author = {Amir Ben-Dor and Tzvika Hartman and Benno Schwikowski and Roded Sharan and Zohar Yakhini},
	booktitle = {RECOMB},
	pages = {48-56},
	url = {http://dblp.uni-trier.de/db/conf/recomb/recomb2003.html#Ben-DorHSSY03},
	year = {2003},
	biburl = {http://www.bibsonomy.org/bibtex/243490fe58c61490d31d926babc10c2f2/dblp},
	description = {dblp},
	ee = {http://doi.acm.org/10.1145/640075.640081}, date = {2003-05-30},
	keywords = {dblp }
}