@inproceedings{conf/bibm/GordonKWS07, title = {Using a Novel Data Transformation Technique to Provide the EMBOSS Software Suite as Semantic Web Services.}, author = {Paul M. K. Gordon and Edward Kawas and Mark Wilkinson and Christoph W. Sensen}, booktitle = {BIBM}, crossref = {conf/bibm/2007}, pages = {117-124}, publisher = {IEEE Computer Society}, url = {http://dblp.uni-trier.de/db/conf/bibm/bibm2007.html#GordonKWS07}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/22477d9839ce3d87eea09d5eba8db2aa9/dblp}, description = {dblp}, ee = {http://doi.ieeecomputersociety.org/10.1109/BIBM.2007.70}, date = {2008-04-23}, keywords = {dblp } } @inproceedings{conf/xpu/ShuTSM07, title = {A Case Study of the Implementation of Agile Methods in a Bioinformatics Project.}, author = {Xueling Shu and Andrei L. Turinsky and Christoph W. Sensen and Frank Maurer}, booktitle = {XP}, crossref = {conf/xpu/2007}, editor = {Giulio Concas and Ernesto Damiani and Marco Scotto and Giancarlo Succi}, pages = {169-170}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/xpu/xp2007.html#ShuTSM07}, volume = {4536}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/2eadd83856aba9b40e2ed976f13467c32/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1007/978-3-540-73101-6_28}, isbn = {978-3-540-73100-9}, date = {2007-07-10}, keywords = {dblp } } @inproceedings{conf/IEEEscc/SohGATTBS07, title = {Bluejay: A Highly Scalable and Integrative Visual Environment for Genome Exploration.}, author = {Jung Soh and Paul M. K. Gordon and Andrew C. Ah-Seng and Andrei L. Turinsky and Morgan L. Taschuk and Krzysztof Borowski and Christoph W. Sensen}, booktitle = {IEEE SCW}, crossref = {conf/IEEEscc/2007w}, pages = {92-98}, publisher = {IEEE Computer Society}, url = {http://dblp.uni-trier.de/db/conf/IEEEscc/scw2007.html#SohGATTBS07}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/287b06aeef079f32d51b1a2c7680d1123/dblp}, description = {dblp}, ee = {http://doi.ieeecomputersociety.org/10.1109/SERVICES.2007.21}, date = {2007-07-10}, keywords = {dblp } } @article{journals/bioinformatics/GordonTS07, title = {Semantic Web Service provision: a realistic framework for Bioinformatics programmers.}, author = {Paul M. K. Gordon and Quang Trinh and Christoph W. Sensen}, journal = {Bioinformatics}, number = {9}, pages = {1178-1180}, url = {http://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics23.html#GordonTS07}, volume = {23}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/2008bba54e02b085e7c45a99998f76e10/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1093/bioinformatics/btm060}, date = {2007-06-11}, keywords = {dblp } } @inproceedings{conf/gccb/WangGTBDS06, title = {Combining a High-Throughput Bioinformatics Grid and Bioinformatics Web Services.}, author = {Chunyan Wang and Paul M. K. Gordon and Andrei L. Turinsky and Jason Burgess and Terry Dalton and Christoph W. Sensen}, booktitle = {GCCB}, crossref = {conf/gccb/2006}, editor = {Werner Dubitzky and Assaf Schuster and Peter M. A. Sloot and Michael Schroeder and Mathilde Romberg}, pages = {1-10}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/gccb/gccb2006.html#WangGTBDS06}, volume = {4360}, year = {2006}, biburl = {http://www.bibsonomy.org/bibtex/2cc8d6cf3ebf45ef0625899ac6a8b6ff3/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1007/978-3-540-69968-2_1}, isbn = {3-540-69841-8}, date = {2007-05-21}, keywords = {dblp } } @article{Gordon2007, title = {Semantic Web Service Provision: a Realistic Framework for Bioinformatics Programmers.}, author = {Paul M K Gordon and Quang Trinh and Christoph W Sensen}, journal = {Bioinformatics}, month = {Mar}, url = {http://dx.doi.org/10.1093/bioinformatics/btm060}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/27ae2cd1910f0361811d7c080e89d583a/p_ansell}, description = {Bioinformatics Workflow Systems}, abstract = {SUMMARY: Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ("MobyServlet") that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: 1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs, and 2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. AVAILABILITY: The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/.}, pii = {btm060}, doi = {10.1093/bioinformatics/btm060}, pmid = {17384428}, owner = {peter}, timestamp = {2007.04.18 12:34}, keywords = {imported } } @book{Hand2005, title = {Handbook of genome research}, address = {Weinheim}, editor = {Christoph W. Sensen}, publisher = {WILEY-VCH}, year = {2005}, biburl = {http://www.bibsonomy.org/bibtex/2b7a38a627d1f9c929a8ace89cf6d3078/gregor}, description = {KUG Recherche-Portal}, isbn = {3-527-31348-6}, keywords = {Bioinformatik } } @article{journals/cga/StromerQGTS05, title = {Jabiru: Harnessing Java 3D Behaviors for Device and Display Portability.}, author = {Julie N. Stromer and Gerald T. Quon and Paul M. K. Gordon and Andrei L. Turinsky and Christoph W. Sensen}, journal = {IEEE Computer Graphics and Applications}, number = {2}, pages = {70-80}, url = {http://dblp.uni-trier.de/db/journals/cga/cga25.html#StromerQGTS05}, volume = {25}, year = {2005}, biburl = {http://www.bibsonomy.org/bibtex/238147aef1bab5cc51796540b2692ba81/dblp}, description = {dblp}, ee = {http://doi.ieeecomputersociety.org/10.1109/MCG.2005.42}, date = {2006-07-19}, keywords = {dblp } } @article{journals/isb/TurinskyAGSTXS04, title = {Bioinformatics visualization and integration with open standards: the Bluejay genomic browser.}, author = {Andrei L. Turinsky and Andrew C. Ah-Seng and Paul M. K. Gordon and Julie N. Stromer and Morgan L. Taschuk and Emily W. Xu and Christoph W. Sensen}, journal = {In Silico Biology}, url = {http://dblp.uni-trier.de/db/journals/isb/isb5.html#TurinskyAGSTXS04}, volume = {5}, year = {2004}, biburl = {http://www.bibsonomy.org/bibtex/2c7c7f913d450cf66513943a84717bc12/dblp}, description = {dblp}, ee = {http://www.bioinfo.de/isb/abstracts/05/0018.html}, date = {2005-04-12}, keywords = {dblp } } @inproceedings{conf/gcb/SensenG98, title = {[Invited Lecture] Automated genome analysis using MAGPIE.}, author = {Christoph Sensen and Terry Gaasterland}, booktitle = {German Conference on Bioinformatics}, url = {http://dblp.uni-trier.de/db/conf/gcb/gcb1998.html#SensenG98}, year = {1998}, biburl = {http://www.bibsonomy.org/bibtex/27b46ee18bbf4963aa037bead1b4f7c37/dblp}, description = {dblp}, date = {2005-02-08}, keywords = {dblp } }