@article{journals/bioinformatics/BirinGET08, title = {Inferring horizontal transfers in the presence of rearrangements by the minimum evolution criterion.}, author = {Hadas Birin and Zohar Gal-Or and Isaac Elias and Tamir Tuller}, journal = {Bioinformatics}, number = {6}, pages = {826-832}, url = {http://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics24.html#BirinGET08}, volume = {24}, year = {2008}, biburl = {http://www.bibsonomy.org/bibtex/2bfec8457bbd5f2da2aad4399ef2fb308/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1093/bioinformatics/btn024}, date = {2008-04-04}, keywords = {dblp } } @inproceedings{conf/wabi/BirinGET07, title = {Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion.}, author = {Hadas Birin and Zohar Gal-Or and Isaac Elias and Tamir Tuller}, booktitle = {WABI}, crossref = {conf/wabi/2007}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, pages = {111-123}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/wabi/wabi2007.html#BirinGET07}, volume = {4645}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/262aed90bbdf905030ae41126f90b2a9f/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1007/978-3-540-74126-8_11}, isbn = {978-3-540-74125-1}, date = {2007-08-30}, keywords = {dblp } } @inproceedings{conf/isbra/JinNST07, title = {A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance.}, author = {Guohua Jin and Luay Nakhleh and Sagi Snir and Tamir Tuller}, booktitle = {ISBRA}, crossref = {conf/isbra/2007}, editor = {Ion I. Mandoiu and Alexander Zelikovsky}, pages = {61-72}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/isbra/isbra2007.html#JinNST07}, volume = {4463}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/248a3e5ab5f3e9ed47b504328f077fe28/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1007/978-3-540-72031-7_6}, isbn = {978-3-540-72030-0}, date = {2007-08-28}, keywords = {dblp } } @article{journals/bioinformatics/JinNST07a, title = {Maximum likelihood of phylogenetic networks.}, author = {Guohua Jin and Luay Nakhleh and Sagi Snir and Tamir Tuller}, journal = {Bioinformatics}, number = {8}, pages = {1046-1047}, url = {http://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics23.html#JinNST07a}, volume = {23}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/28a946006e3bec6b4e207923f1d1e60ab/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1093/bioinformatics/btm075}, date = {2007-06-11}, keywords = {dblp } } @article{journals/jacm/ChorT06, title = {Finding a maximum likelihood tree is hard.}, author = {Benny Chor and Tamir Tuller}, journal = {J. ACM}, number = {5}, pages = {722-744}, url = {http://dblp.uni-trier.de/db/journals/jacm/jacm53.html#ChorT06}, volume = {53}, year = {2006}, biburl = {http://www.bibsonomy.org/bibtex/24858359eb5451f040f03060a42574353/dblp}, description = {dblp}, ee = {http://doi.acm.org/10.1145/1183907.1183909}, date = {2007-03-06}, keywords = {dblp } } @article{journals/bioinformatics/JinNST07, title = {Efficient parsimony-based methods for phylogenetic network reconstruction.}, author = {Guohua Jin and Luay Nakhleh and Sagi Snir and Tamir Tuller}, journal = {Bioinformatics}, number = {2}, pages = {123-128}, url = {http://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics23.html#JinNST07}, volume = {23}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/229025fd129f7c9e27d2f68a5ff0b1412/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1093/bioinformatics/btl313}, date = {2007-01-29}, keywords = {dblp } } @article{journals/bioinformatics/JinNST06, title = {Maximum likelihood of phylogenetic networks.}, author = {Guohua Jin and Luay Nakhleh and Sagi Snir and Tamir Tuller}, journal = {Bioinformatics}, number = {21}, pages = {2604-2611}, url = {http://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics22.html#JinNST06}, volume = {22}, year = {2006}, biburl = {http://www.bibsonomy.org/bibtex/2dbfc2f571cf358b962282d93965ad8b4/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1093/bioinformatics/btl452}, date = {2007-01-26}, keywords = {dblp } } @inproceedings{conf/iccl/HatcherT88, title = {Efficient retargetable compiler code generation.}, author = {Philip J. Hatcher and J. W. Tuller}, booktitle = {ICCL}, crossref = {conf/iccl/1988}, pages = {25-30}, publisher = {IEEE}, url = {http://dblp.uni-trier.de/db/conf/iccl/iccl1988.html#HatcherT88}, year = {1988}, biburl = {http://www.bibsonomy.org/bibtex/2bb29dd1ff4a9d8353637fd7ef8d92696/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1109/ICCL.1988.13039}, date = {2006-11-03}, keywords = {dblp } } @inproceedings{conf/recomb/ChorT06, title = {Biological Networks: Comparison, Conservation, and Evolutionary Trees.}, author = {Benny Chor and Tamir Tuller}, booktitle = {RECOMB}, crossref = {conf/recomb/2006}, editor = {Alberto Apostolico and Concettina Guerra and Sorin Istrail and Pavel A. Pevzner and Michael S. Waterman}, pages = {30-44}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/recomb/recomb2006.html#ChorT06}, volume = {3909}, year = {2006}, biburl = {http://www.bibsonomy.org/bibtex/231074783b2a1b1c47c62baad4e309aa9/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1007/11732990_3}, isbn = {3-540-33295-2}, date = {2006-04-03}, keywords = {dblp } } @inproceedings{conf/wabi/TullerOMCC05, title = {Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds.}, author = {Tamir Tuller and Efrat Oron and Erez Makavy and Daniel A. Chamovitz and Benny Chor}, booktitle = {WABI}, crossref = {conf/wabi/2005}, editor = {Rita Casadio and Gene Myers}, pages = {53-64}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, url = {http://dblp.uni-trier.de/db/conf/wabi/wabi2005.html#TullerOMCC05}, volume = {3692}, year = {2005}, biburl = {http://www.bibsonomy.org/bibtex/27ab0b9f2755819f05b16c84f532dd986/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1007/11557067_5}, isbn = {3-540-29008-7}, date = {2005-11-09}, keywords = {dblp } }