@article{hissam2002, title = {Trust and Vulnerability in Open Source Software}, author = {S. Hissam and D. Plakosh and C. Weinstock}, journal = {IEE Proceedings - Software Engineering}, number = {1}, volume = {149}, year = {2002}, biburl = {http://www.bibsonomy.org/bibtex/2cc96bae18fb9cc5e2d4611063d560781/cabird}, description = {my huge bibtex}, date-added = {2008-01-20 20:37:42 -0800}, date-modified = {2008-01-20 20:37:43 -0800}, keywords = {imported } } @incollection{Weinstock64, title = {Saturnalien und Neujahrsfest in den Märtyrerberichten}, address = {Münster}, author = {St. Weinstock}, booktitle = {Mullus, Festschrift Theodor Klauser}, editor = {A. Stuiber and A. Hermann}, number = {1}, pages = {391--400}, series = {JAC.E}, year = {1964}, biburl = {http://www.bibsonomy.org/bibtex/230268a38c634d335cd60eaa83be9e8c9/avs}, shorttitle = {Saturnalien und Neujahrsfest}, keywords = {Märtyrer } } @inproceedings{conf/codes/KraemerGWLAM07, title = {HySim: a fast simulation framework for embedded software development.}, author = {Stefan Kraemer and Lei Gao and Jan Weinstock and Rainer Leupers and Gerd Ascheid and Heinrich Meyr}, booktitle = {CODES+ISSS}, crossref = {conf/codes/2007}, editor = {Soonhoi Ha and Kiyoung Choi and Nikil D. Dutt and Jürgen Teich}, pages = {75-80}, publisher = {ACM}, url = {http://dblp.uni-trier.de/db/conf/codes/codes2007.html#KraemerGWLAM07}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/26bf5c21fb88249c38ce5c1649f4ada8b/dblp}, description = {dblp}, date = {2008-04-08}, ee = {http://doi.acm.org/10.1145/1289816.1289837}, isbn = {978-1-59593-824-4}, keywords = {dblp } } @techreport{barbacci95, title = {Quality Attributes}, author = {Mario Barbacci and Mark H. Klein and Thomas A. Longstaff and Charles B. Weinstock}, institution = {Software Engineering Institute}, number = {CMU/SEI-95-TR-021}, type = {Technical report}, url = {http://www.sei.cmu.edu/pub/documents/95.reports/pdf/tr021.95.pdf}, year = {1995}, biburl = {http://www.bibsonomy.org/bibtex/2328b5913c46335a026317ae5daff45cb/neilernst}, abstract = {Computer systems are used in many critical applications where a failure can have serious consequences (loss of lives or property). Developing systematic ways to relate the software quality attributes of a system to the system's architecture provides a sound basis for making objective decisions about design trade-offs and enables engineers to make reasonably accurate predictions about a system's attributes that are free from bias and hidden assumptions. The ultimate goal is the ability to quantitatively evaluate and trade off multiple software quality attributes to arrive at a better overall system. The purpose of this report is to take a small step in the direction of developing a unifying approach for reasoning about multiple software quality attributes. In this report, we define software quality, introduce a generic taxonomy of attributes, discuss the connections between the attributes, and discuss future work leading to an attribute-based methodology for evaluating software architectures. }, keywords = {quality requirements software } } @article{Adams:2000:full, title = {{The genome sequence of drosophila melanogaster}}, author = {Mark D. Adams and Susan E. Celniker and Robert A. Holt and Cheryl A. Evans and Jeannine D. Gocayne and Peter G. Amanatides and Steven E. Scherer and Peter W. Li and Roger A. Hoskins and Richard F. Galle and Reed A. George and Suzanna E. Lewis and Stephen Richards and Michael Ashburner and Scott N. Henderson and Granger G. Sutton and Jennifer R. Wortman and Mark D. Yandell and Qing Zhang and Lin X. Chen and Rhonda C. Brandon and Yu-Hui C. Rogers and Robert G. Blazej and Mark Champe and Barret D. Pfeiffer and Kenneth H. Wan and Clare Doyle and Evan G. Baxter and Gregg Helt and Catherine R. Nelson and George L. Gabor Miklos and Josep F. Abril and Anna Agbayani and Hui-Jin An and Cynthia Andrews-Pfannkoch and Danita Baldwin and Richard M. Ballew and Anand Basu and James Baxendale and Leyla Bayraktaroglu and Ellen M. Beasley and Karen Y. Beeson and P. V. Benos and Benjamin P. Berman and Deepali Bhandari and Slava Bolshakov and Dana Borkova and Michael R. Botchan and John Bouck and Peter Brokstein and Phillipe Brottier and Kenneth C. Burtis and Dana A. Busam and Heather Butler and Edouard Cadieu and Angela Center and Ishwar Chandra and J. Michael Cherry and Simon Cawley and Carl Dahlke and Lionel B. Davenport and Peter Davies and Beatriz de Pablos and Arthur Delcher and Zuoming Deng and Anne Deslattes Mays and Ian Dew and Suzanne M. Dietz and Kristina Dodson and Lisa E. Doup and Michael Downes and Shannon Dugan-Rocha and Boris C. Dunkov and Patrick Dunn and Kenneth J. Durbin and Carlos C. Evangelista and Concepcion Ferraz and Steven Ferriera and Wolfgang Fleischmann and Carl Fosler and Andrei E. Gabrielian and Neha S. Garg and William M. Gelbart and Ken Glasser and Anna Glodek and Fangcheng Gong and J. Harley Gorrell and Zhiping Gu and Ping Guan and Michael Harris and Nomi L. Harris and Damon Harvey and Thomas J. Heiman and Judith R. Hernandez and Jarrett Houck and Damon Hostin and Kathryn A. Houston and Timothy J. Howland and Ming-Hui Wei and Chinyere Ibegwam and Mena Jalali and Francis Kalush and Gary H. Karpen and Zhaoxi Ke and James A. Kennison and Karen A. Ketchum and Bruce E. Kimmel and Chinnappa D. Kodira and Cheryl Kraft and Saul Kravitz and David Kulp and Zhongwu Lai and Paul Lasko and Yiding Lei and Alexander A. Levitsky and Jiayin Li and Zhenya Li and Yong Liang and Xiaoying Lin and Xiangjun Liu and Bettina Mattei and Tina C. McIntosh and Michael P. McLeod and Duncan McPherson and Gennady Merkulov and Natalia V. Milshina and Clark Mobarry and Joe Morris and Ali Moshrefi and Stephen M. Mount and Mee Moy and Brian Murphy and Lee Murphy and Donna M. Muzny and David L. Nelson and David R. Nelson and Keith A. Nelson and Katherine Nixon and Deborah R. Nusskern and Joanne M. Pacleb and Michael Palazzolo and Gjange S. Pittman and Sue Pan and John Pollard and Vinita Puri and Martin G. Reese and Knut Reinert and Karin Remington and Robert D. C. Saunders and Frederick Scheeler and Hua Shen and Bixiang Christopher Shue and Inga Siden"=Kiamos and Michael Simpson and Marian P. Skupski and Tom Smith and Eugene Spier and Allan C. Spradling and Mark Stapleton and Renee Strong and Eric Sun and Robert Svirskas and Cyndee Tector and Russell Turner and Eli Venter and Aihui H. Wang and Xin Wang and Zhen-Yuan Wang and David A. Wassarman and George M. Weinstock and Jean Weissenbach and Sherita M. Williams and Trevor Woodage and Kim C. Worley and David Wu and Song Yang and Q. Alison Yao and Jane Ye and Ru-Fang Yeh and Jayshree S. Zaveri and Ming Zhan and Guangren Zhang and Qi Zhao and Liansheng Zheng and Xiangqun H. Zheng and Fei N. Zhong and Wenyan Zhong and Xiaojun Zhou and Shiaoping Zhu and Xiaohong Zhu and Hamilton O. Smith and Richard A. Gibbs and Eugene W. Myers and Gerald M. Rubin and J. Craig Venter}, journal = {Science}, number = {5461}, pages = {2185--2195}, url = {http://www.sciencemag.org/cgi/content/abstract/sci;287/5461/2185}, volume = {287}, year = {2000}, biburl = {http://www.bibsonomy.org/bibtex/202d97baf669d8d6d8464a9f76cf774ca/tkirsten}, abstract = {The fly Drosophila melanogaster is one of the most intensively studied organisms in biology and serves as a model system for the investigation of many developmental and cellular processes common to higher eukaryotes, including humans. We have determined the nucleotide sequence of nearly all of the ~120-megabase euchromatic portion of the Drosophila genome using a whole-genome shotgun sequencing strategy supported by extensive clone-based sequence and a high-quality bacterial artificial chromosome physical map. Efforts are under way to close the remaining gaps; however, the sequence is of sufficient accuracy and contiguity to be declared substantially complete and to support an initial analysis of genome structure and preliminary gene annotation and interpretation. The genome encodes ~13,600 genes, somewhat fewer than the smaller Caenorhabditis elegans genome, but with comparable functional diversity.}, owner = {tkirsten}, keywords = {imported } } @article{Havlak:2004aa, title = {The Atlas genome assembly system}, author = {Paul Havlak and Rui Chen and K James Durbin and Amy Egan and Yanru Ren and Xing-Zhi Song and George M Weinstock and Richard A Gibbs}, journal = {Genome Res}, month = {Apr}, number = {4}, pages = {721--32}, volume = {14}, year = {2004}, biburl = {http://www.bibsonomy.org/bibtex/2a675b55e8044d62ac5f2515e3b8961be/dzerbino}, abstract = {Atlas is a suite of programs developed for assembly of genomes by a "combined approach" that uses DNA sequence reads from both BACs and whole-genome shotgun (WGS) libraries. The BAC clones afford advantages of localized assembly with reduced computational load, and provide a robust method for dealing with repeated sequences. Inclusion of WGS sequences facilitates use of different clone insert sizes and reduces data production costs. A core function of Atlas software is recruitment of WGS sequences into appropriate BACs based on sequence overlaps. Because construction of consensus sequences is from local assembly of these reads, only small (<0.1%) units of the genome are assembled at a time. Once assembled, each BAC is used to derive a genomic layout. This "sequence-based" growth of the genome map has greater precision than with non-sequence-based methods. Use of BACs allows correction of artifacts due to repeats at each stage of the process. This is aided by ancillary data such as BAC fingerprint, other genomic maps, and syntenic relations with other genomes. Atlas was used to assemble a draft DNA sequence of the rat genome; its major components including overlapper and split-scaffold are also being used in pure WGS projects.}, doi = {10.1101/gr.2264004}, local-url = {file://localhost/Users/danielzerbino/Documents/Papers/2004/Havlak/Genome%20Res%202004%20Havlak.pdf}, language = {English}, issue = {4}, pii = {14/4/721}, pmid = {15060016}, uri = {papers://055852FE-1648-42FE-91D0-8CA474D2B905/Paper/p23}, affiliation = {Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.}, keywords = {Animals, Artificial, Bacterial Chromosomes, Contig Genome, Mapping, Rats, Software, } } @inproceedings{conf/dsn/BloomfieldMMSW07, title = {Assurance Cases for Security: The Metrics Challenge.}, author = {Robin E. Bloomfield and Marcelo Masera and Ann Miller and O. Sami Saydjari and Charles B. Weinstock}, booktitle = {DSN}, crossref = {conf/dsn/2007}, pages = {807-808}, publisher = {IEEE Computer Society}, url = {http://dblp.uni-trier.de/db/conf/dsn/dsn2007.html#BloomfieldMMSW07}, year = {2007}, biburl = {http://www.bibsonomy.org/bibtex/2988585a7d3c9e76c189bdaa1d254c91e/dblp}, description = {dblp}, ee = {http://doi.ieeecomputersociety.org/10.1109/DSN.2007.18}, date = {2007-06-26}, keywords = {dblp } } @article{citeulike:570493, title = {Determination of apolipoprotein A-I by kinetic nephelometry.}, author = {N. Weinstock and M. Bartholome and D. Seidel}, journal = {Biochim Biophys Acta}, month = {January}, number = {1}, pages = {279--288}, url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve\&db=pubmed\&dopt=Abstract\&list_uids=6783109}, volume = {663}, year = {1981}, biburl = {http://www.bibsonomy.org/bibtex/220c4830a72c07e4cbcf51d9517544c4d/biblio24}, abstract = {Apolipoprotein A-I concentration in human serum was determined by kinetic nephelometry. Under optimal reaction conditions and within the normal physiological range the relation between apolipoprotein A-I concentration and measured rate units it approximately linear. The detection limit of the assay lies at 2 micrograms/ml. The coefficient of variation within one series is 1.44%. The correlation coefficient with alpha-cholesterol, as determined by agarose electrophoresis followed by polyanion precipitation, is better than 0.94. Addition of detergent to serum dilutions increases the reaction rate, suggesting that delipidation changes the antigenic expression of apolipoprotein A-I. The magnitude of this change is constant in normal controls, but not in special pathological cases. The described technique can be recommended for routine use in clinical chemistry for measurement of apolipoprotein A-I.}, issn = {0006-3002}, doi = {10.1016/0005-2760(81)90214-9 }, citeulike-article-id = {570493}, priority = {2}, keywords = {apoa immunonephelometry surfactant } } @article{journals/jbi/KaufmanPHMPWGSS03, title = {Usability in the real world: assessing medical information technologies in patients' homes.}, author = {David R. Kaufman and Vimla L. Patel and Charlyn Hilliman and Philip C. Morin and Jenia Pevzner and Ruth S. Weinstock and Robin Goland and Steven Shea and Justin Starren}, journal = {Journal of Biomedical Informatics}, number = {1-2}, pages = {45-60}, url = {http://dblp.uni-trier.de/db/journals/jbi/jbi36.html#KaufmanPHMPWGSS03}, volume = {36}, year = {2003}, biburl = {http://www.bibsonomy.org/bibtex/2e728d1c3c95425e1c58ef7b15e75dc67/dblp}, description = {dblp}, ee = {http://dx.doi.org/10.1016/S1532-0464(03)00056-X}, date = {2006-07-05}, keywords = {dblp } } @inproceedings{conf/icdcs/BarbacciDW90, title = {Application-Level Programming.}, author = {Mario Barbacci and Dennis L. Doubleday and Charles B. Weinstock}, booktitle = {ICDCS}, crossref = {conf/icdcs/1990}, pages = {458-465}, publisher = {IEEE Computer Society}, url = {http://dblp.uni-trier.de/db/conf/icdcs/icdcs90.html#BarbacciDW90}, year = {1990}, biburl = {http://www.bibsonomy.org/bibtex/20153970b093f71d0ceae20fa9ea35be1/dblp}, description = {dblp}, date = {2005-09-20}, keywords = {dblp } }