@article{DemnerFushman:2009, abstract = {Computerized Clinical Decision Support (CDS) aims to aid decision making of health care providers and the public by providing easily accessible health-related information at the point and time it is needed. Natural language processing (NLP) is instrumental in using free-text information to drive CDS, representing clinical knowledge and CDS interventions in standardized formats, and leveraging clinical narrative. The early innovative NLP research of clinical narrative was followed by a period of stable research conducted at the major clinical centers and a shift of mainstream interest to biomedical NLP. This review primarily focuses on the recently renewed interest in development of fundamental NLP methods and advances in the NLP systems for CDS. The current solutions to challenges posed by distinct sublanguages, intended user groups, and support goals are discussed.}, added-at = {2009-08-28T21:54:11.000+0200}, author = {Demner-Fushman, Dina and Chapman, Wendy W. and McDonald, Clement J.}, biburl = {http://www.bibsonomy.org/bibtex/270a3dbc9b4267af21c93d25ad6042dfb/diego_ma}, interhash = {0d6b01964a41eee6a62674c8fe842a86}, intrahash = {70a3dbc9b4267af21c93d25ad6042dfb}, journal = {Journal of Biomedical Informatics}, keywords = {biomedical NLP}, note = {Online uncorrected proof}, timestamp = {2009-08-28T21:54:11.000+0200}, title = {What Can Natural Language Processing Do for Clinical Decision Support?}, year = 2009 } @book{Chakrabarti:2003, abstract = {TOC: 1 - Introduction 2 - Crawling the Web 3 - Web search and information retrieval 4 - Similarity and clustering 5 - Supervised learning 6 - Semisupervised learning 7 - Social network analysis 8 - Resource discovery 9 - The future of web mining}, added-at = {2009-04-20T05:34:59.000+0200}, address = {Amsterdam}, author = {Chakrabarti, Soumen}, biburl = {http://www.bibsonomy.org/bibtex/2722a822b6752526ee0e05c369f3cd6d4/diego_ma}, interhash = {88bbf9b6bc5b9bd829085ae4bfa03a22}, intrahash = {722a822b6752526ee0e05c369f3cd6d4}, keywords = {search machine_learning similarity text_mining nlp inf_retr link_analysis clustering}, library = {Mine (April 2009)}, publisher = {Morgan Kaufmann}, timestamp = {2009-04-20T05:34:59.000+0200}, title = {Mining the Web: Discovering Knowledge from Hypertext Data}, year = 2003 } @incollection{Ananiadou:2009, abstract = {Text mining provides the automated means to manage information overload and overlook. By adding meaning to text, text mining techniques produce a much more structured analysis of textual knowledge than do simple word searches, and can provide powerful tools for knowledge discovery in biomedicine. In this chapter, the author focus on the text mining services for biomedicine offered by the United Kingdom National Centre for Text Mining. }, added-at = {2009-02-23T00:18:47.000+0100}, address = {Hershey, PA}, author = {Ananiadou, Sophia}, biburl = {http://www.bibsonomy.org/bibtex/2d09b173e6b639e606ffa47f7f7fba5ab/diego_ma}, booktitle = {Information Retrieval in Biomedicine: Natural Language Processing for Knowledge Integration}, chapter = 1, editor = {Prince, Violaine and Roche, Mathieu}, interhash = {d9eac6b1c5678fff4997f30dd9e6a3f5}, intrahash = {d09b173e6b639e606ffa47f7f7fba5ab}, keywords = {NLP biomedical}, pages = {8 pages}, publisher = {IGI Global}, timestamp = {2009-02-23T00:18:47.000+0100}, title = {Text Mining for Biomedicine}, url = {http://www.igi-global.com/reference/details.asp?ID=33268}, year = 2009 } @article{Zweigenbaum:2007, abstract = {It is now almost 15 years since the publication of the first paper on text mining in the genomics domain, and decades since the first paper on text mining in the medical domain. Enormous progress has been made in the areas of information retrieval, evaluation methodologies and resource construction. Some problems, such as abbreviation-handling, can essentially be considered solved problems, and others, such as identification of gene mentions in text, seem likely to be solved soon. However, a number of problems at the frontiers of biomedical text mining continue to present interesting challenges and opportunities for great improvements and interesting research. In this article we review the current state of the art in biomedical text mining or ‘BioNLP’ in general, focusing primarily on papers published within the past year.}, added-at = {2008-11-20T06:55:12.000+0100}, author = {Zweigenbaum, Pierre and Demner-Fushman, Dina and Yu, Hong and Cohen, Kevin B.}, biburl = {http://www.bibsonomy.org/bibtex/28f63e984c62fd2dce54c72072d07994f/diego_ma}, date = {2008-01-14}, ee = {http://dx.doi.org/10.1093/bib/bbm045}, interhash = {dbd6009f78f38ddfd1821a49b3e12d27}, intrahash = {8f63e984c62fd2dce54c72072d07994f}, journal = {Briefings in Bioinformatics}, keywords = {NLP text_mining biomedical}, number = 5, pages = {358-375}, timestamp = {2008-11-20T06:55:12.000+0100}, title = {Frontiers of biomedical text mining: current progress.}, url = {http://dblp.uni-trier.de/db/journals/bib/bib8.html#ZweigenbaumDYC07}, volume = 8, year = 2007 } @article{Cohen:2005, added-at = {2008-01-31T04:52:50.000+0100}, author = {Cohen, Aaron M. and Hersh, William R.}, biburl = {http://www.bibsonomy.org/bibtex/2684e6c2d71e9e7b08bc7812fc32c9cc1/diego_ma}, date = {2005-11-09}, description = {dblp}, interhash = {ee530ce6ede367696d219b397bc00364}, intrahash = {684e6c2d71e9e7b08bc7812fc32c9cc1}, journal = {Briefings in Bioinformatics}, keywords = {NLP biomedical text_mining}, number = 1, pages = {57-71}, timestamp = {2008-01-31T04:52:50.000+0100}, title = {A survey of current work in biomedical text mining.}, url = {http://bib.oxfordjournals.org/cgi/content/abstract/6/1/57}, volume = 6, year = 2005 } @book{ZZZ-Herzog:1991, added-at = {2007-12-14T02:49:42.000+0100}, address = {Berlin}, biburl = {http://www.bibsonomy.org/bibtex/28944db8ce89b83442b32b9f07f5a3605/diego_ma}, booktitle = {Text Understanding in {LILOG}: Integrating Computational Linguistics and Artificial Intelligence - final report on the IBM {G}ermany {LILOG} project}, editor = {Herzog, Otthein and Rollinger, Claus-Rainer}, interhash = {8f13ec97c28d71b9909689f749385b6f}, intrahash = {8944db8ce89b83442b32b9f07f5a3605}, keywords = {NLP}, publisher = {Springer-Verlag}, series = {Lecture Notes in Computer Science}, timestamp = {2007-12-14T02:49:42.000+0100}, title = {Text Understanding in {LILOG}: Integrating Computational Linguistics and Artificial Intelligence - final report on the IBM {G}ermany {LILOG} project}, volume = 546, year = 1991 } @book{ZZZ-Bates:1993, added-at = {2007-12-14T02:49:37.000+0100}, address = {Cambridge}, biburl = {http://www.bibsonomy.org/bibtex/2818cb1d1ac7cb7135989ddf1d9035928/diego_ma}, booktitle = {Challenges in Natural Language Processing}, editor = {Bates, Madeleine and Weischedel, Ralph M.}, interhash = {df02abf8cdcda2079d97a5629fd75291}, intrahash = {818cb1d1ac7cb7135989ddf1d9035928}, keywords = {NLP}, publisher = {Cambridge University Press}, series = {Studies in Natural Language Processing}, timestamp = {2007-12-14T02:49:37.000+0100}, title = {Challenges in Natural Language Processing}, year = 1993 } @book{ZZZ-Klavans:1996, added-at = {2007-12-14T02:49:32.000+0100}, address = {Cambridge, MA}, biburl = {http://www.bibsonomy.org/bibtex/29e93538e06681f568d81ebce77460990/diego_ma}, editor = {Klavans, Judith L. and Resnik, Philip}, interhash = {b2219e0126b67795ac9c20ad5c175f42}, intrahash = {9e93538e06681f568d81ebce77460990}, keywords = {NLP}, publisher = {MIT Press}, timestamp = {2007-12-14T02:49:32.000+0100}, title = {The Balancing Act: combining symbolic and statistical approaches to language}, year = 1996 } @book{Cole:1996, added-at = {2007-12-14T02:49:31.000+0100}, address = {Oregon Graduate Institute}, biburl = {http://www.bibsonomy.org/bibtex/2d4cbdf334b8ed8f80be1b76460666350/diego_ma}, booktitle = {Survey of the State of the Art in Human Language Technology}, editor = {Cole, Ronald A. and Mariani, Joseph and Uszkoreit, Hans and Zaenen, Annie and Zue, Victor}, interhash = {c1ef91263aa037b7778699473d2f6511}, intrahash = {d4cbdf334b8ed8f80be1b76460666350}, keywords = {NLP}, publisher = {CSLU}, timestamp = {2007-12-14T02:49:31.000+0100}, title = {Survey of the State of the Art in Human Language Technology}, url = {http://www.cse.ogi.edu/CSLU/HLTsurvey/}, year = 1996 } @book{ZZZ-Strzalkowski:1999, added-at = {2007-12-14T02:49:21.000+0100}, address = {Dordrecht, The Netherlands}, biburl = {http://www.bibsonomy.org/bibtex/266722f58f34908d113e39be8a96969a2/diego_ma}, editor = {Strzalkowski, Tomek}, interhash = {8f036eb6fc17dc16bff6ff498c0f7ed4}, intrahash = {66722f58f34908d113e39be8a96969a2}, keywords = {NLP inf_retrieval}, publisher = {Kluwer}, timestamp = {2007-12-14T02:49:21.000+0100}, title = {Natural Language Information Retrieval}, year = 1999 } @proceedings{ZZZ-NLDB99, added-at = {2007-12-14T02:49:21.000+0100}, address = {Klagenfurt, Austria}, biburl = {http://www.bibsonomy.org/bibtex/2b7f4bec6235471fe425abe23227278a2/diego_ma}, booktitle = {Proc. NLDB'99}, editor = {Friedl, G{\"u}nter and Mayr, Heinrich C.}, interhash = {bf510a1f13657bbb22ab158bac89280a}, intrahash = {b7f4bec6235471fe425abe23227278a2}, keywords = {NLP}, timestamp = {2007-12-14T02:49:21.000+0100}, title = {Proc. NLDB'99 -- 4th Int. Conf. on Applications of Natural Language to Information Systems}, year = 1999 } @proceedings{ZZZ-Wiebe:2000, added-at = {2007-12-14T02:49:18.000+0100}, address = {Seattle, WA}, biburl = {http://www.bibsonomy.org/bibtex/21359650fc90ec3fc72712f86657d4f1b/diego_ma}, booktitle = {Proc. 1st Meeting of the {North} {American} Chapter of the Association for Computational Linguistics}, editor = {Wiebe, Janyce}, interhash = {90fd92818bab943fed4aa2c2b237c13b}, intrahash = {1359650fc90ec3fc72712f86657d4f1b}, keywords = {NLP}, organization = {Association for Computational Linguistics}, publisher = {Morgan Kaufmann}, timestamp = {2007-12-14T02:49:18.000+0100}, title = {Proc. 1st Meeting of the {North} {American} Chapter of the Association for Computational Linguistics}, year = 2000 } @proceedings{ZZZ-Nirenburg:2000, added-at = {2007-12-14T02:49:16.000+0100}, address = {Seattle, WA}, biburl = {http://www.bibsonomy.org/bibtex/281353daa047b509f6d8bede371f4afeb/diego_ma}, booktitle = {Proc. 6th Applied Natural Language Processing Conference}, editor = {Nirenburg, Sergei}, interhash = {10f8152dafe8cf85a22e553993974532}, intrahash = {81353daa047b509f6d8bede371f4afeb}, keywords = {NLP}, publisher = {Morgan Kaufmann}, timestamp = {2007-12-14T02:49:16.000+0100}, title = {Proc. 6th Applied Natural Language Processing Conference}, year = 2000 } @proceedings{ZZZ-NLPIR, added-at = {2007-12-14T02:49:15.000+0100}, biburl = {http://www.bibsonomy.org/bibtex/2d80d8cfda5389d167cf5295950bc343d/diego_ma}, booktitle = {Proc. ACL workshop in Recent Advances in NLP and IR}, editor = {Klavan, Judith and Gonzalo, Julio}, interhash = {ad7d9f82c34975a4a832ed8751872cf5}, intrahash = {d80d8cfda5389d167cf5295950bc343d}, keywords = {NLP inf_retrieval}, organization = {ACL}, timestamp = {2007-12-14T02:49:15.000+0100}, title = {Proceedings of the Workshop on Recent Advances in Natural Language Processing and Information Retrieval}, year = 2000 } @book{NLE:2001, added-at = {2007-12-14T02:49:03.000+0100}, biburl = {http://www.bibsonomy.org/bibtex/2ef2173ed480320debeba82d14a00e7a5/diego_ma}, editor = {Hirschman, Lynette and Gaizauskas, Robert}, interhash = {4edf5d3d92d414c52887c7df7218262a}, intrahash = {ef2173ed480320debeba82d14a00e7a5}, keywords = {NLP}, number = 4, timestamp = {2007-12-14T02:49:03.000+0100}, title = {Natural Langage Engineering, Special Issue on Question Answering}, volume = 7, year = 2001 } @proceedings{ZZZ-ALTW05, added-at = {2007-12-14T02:48:54.000+0100}, biburl = {http://www.bibsonomy.org/bibtex/29c31bd2bcf66d4b651a8de6ef2f338d7/diego_ma}, booktitle = {Proc. ALTW 2005}, editor = {Baldwin, Tim and van Zaanen, Menno}, interhash = {7cfaf59f50454c7ab5f09dee2f2f207c}, intrahash = {9c31bd2bcf66d4b651a8de6ef2f338d7}, keywords = {NLP proceedings}, publisher = {ALTA}, timestamp = {2007-12-14T02:48:54.000+0100}, title = {Proceedings of the 2006 Australasian Language Technology Workshop (ALTW 2005)}, url = {http://www.alta.asn.au/}, year = 2005 } @proceedings{ZZZ-ACL:2006, added-at = {2007-12-14T02:48:50.000+0100}, address = {Sydney}, biburl = {http://www.bibsonomy.org/bibtex/2cd1f538dd90904423a9721bcde58d215/diego_ma}, booktitle = {Proceedings COLING/ACL 2006}, editor = {Calzolari, Nicoletta and Cardie, Claire and Isabelle, Pierre}, interhash = {24f4c77516404210ce7aa4ee83ec464f}, intrahash = {cd1f538dd90904423a9721bcde58d215}, keywords = {NLP}, publisher = {Association for Computational Linguistics}, timestamp = {2007-12-14T02:48:50.000+0100}, title = {Proceedings of the 21st International Conference on Computational Linguistics and 44th Annual Meeting of the ACL}, url = {http://www.aclweb.org/anthology/P/P06/P06-1}, year = 2006 } @book{Winograd:1972, added-at = {2007-12-14T02:48:20.000+0100}, author = {Winograd, Terry}, biburl = {http://www.bibsonomy.org/bibtex/245c7f5488302b3fa9bc6a1fb01c52cb5/diego_ma}, interhash = {d72d9d4dfb0223b20b7f384f146a8c35}, intrahash = {45c7f5488302b3fa9bc6a1fb01c52cb5}, keywords = {NLP}, publisher = {Academic Press}, timestamp = {2007-12-14T02:48:20.000+0100}, title = {Understanding Natural Language}, year = 1972 } @inproceedings{Wilks:1998, added-at = {2007-12-14T02:48:08.000+0100}, address = {Herstmonceaux, Sussex}, author = {Wilks, Yorick}, biburl = {http://www.bibsonomy.org/bibtex/277dee9e84e22cb0f22b1d753d82c4a4b/diego_ma}, booktitle = {Proc. SENSEVAL Conference}, interhash = {657d265a2df86f8bd17228649cb6e9b4}, intrahash = {77dee9e84e22cb0f22b1d753d82c4a4b}, keywords = {word_sense NLP}, timestamp = {2007-12-14T02:48:08.000+0100}, title = {Is Word Sense Disambiguation Just One More {NLP} Task?}, url = {http://www.dcs.shef.ac.uk/{\~{}}yorick/papers.html}, year = 1998 } @article{Wiebe:1996, abstract = {Because using language involves so much more than creating and comprehending isolated utterances, computers, like people, must accommodate linguistic and interpersonal context if they are to use language in a natural way.}, added-at = {2007-12-14T02:48:06.000+0100}, author = {Wiebe, Janyce and Hirst, Graeme and Horton, Diane}, biburl = {http://www.bibsonomy.org/bibtex/288d90d67852787e0314bd985c789ca24/diego_ma}, interhash = {4319aed9a27c72562ae6c40ed85f64db}, intrahash = {88d90d67852787e0314bd985c789ca24}, journal = {Communications of the ACM}, keywords = {NLP context}, number = 1, pages = {102-111}, timestamp = {2007-12-14T02:48:06.000+0100}, title = {Language Use in Context}, volume = 39, year = 1996 }