%0 Journal Article %1 vera_plmaddon:power-law_2007 %A Vera, Julio %A Sun, Cheng %A Oertel, Yvonne %A Wolkenhauer, Olaf %D 2007 %J Bioinformatics (Oxford, England) %K Algorithms, Biological, Computer Languages, Models, Programming Rostock SBI Simulation, Software, Systems biology %N 19 %P 2638--2640 %R 10.1093/bioinformatics/btm245 %T PLMaddon: a power-law module for the Matlab SBToolbox %U http://www.ncbi.nlm.nih.gov/pubmed/17495997 %V 23 %X PLMaddon is a General Public License (GPL) software module designed to expand the current version of the SBToolbox (a Matlab toolbox for systems biology; www.sbtoolbox.org) with a set of functions for the analysis of power-law models, a specific class of kinetic models, set in ordinary differential equations (ODE) and in which the kinetic orders can have positive/negative non-integer values. The module includes functions to generate power-law Taylor expansions of other ODE models (e.g. Michaelis-Menten type models), as well as algorithms to estimate steady-states. The robustness and sensitivity of the models can also be analysed and visualized by computing the power-law's logarithmic gains and sensitivities.

@article{vera_plmaddon:power-law_2007, abstract = {{PLMaddon} is a General Public License {(GPL)} software module designed to expand the current version of the {SBToolbox} (a Matlab toolbox for systems biology; www.sbtoolbox.org) with a set of functions for the analysis of power-law models, a specific class of kinetic models, set in ordinary differential equations {(ODE)} and in which the kinetic orders can have positive/negative non-integer values. The module includes functions to generate power-law Taylor expansions of other {ODE} models (e.g. {Michaelis-Menten} type models), as well as algorithms to estimate steady-states. The robustness and sensitivity of the models can also be analysed and visualized by computing the power-law's logarithmic gains and sensitivities.}, added-at = {2010-09-17T16:55:15.000+0200}, author = {Vera, Julio and Sun, Cheng and Oertel, Yvonne and Wolkenhauer, Olaf}, biburl = {https://www.bibsonomy.org/bibtex/27c62d3245796ce5ba080930a5e615163/ra1602}, doi = {10.1093/bioinformatics/btm245}, interhash = {47cb36fbb2a7ad656f679447d3c4aed1}, intrahash = {7c62d3245796ce5ba080930a5e615163}, issn = {1367-4811}, journal = {Bioinformatics {(Oxford,} England)}, keywords = {Algorithms, Biological, Computer Languages, Models, Programming Rostock SBI Simulation, Software, Systems biology}, month = oct, note = {{PMID:} 17495997}, number = 19, pages = {2638--2640}, shorttitle = {{PLMaddon}}, timestamp = {2010-09-17T16:55:23.000+0200}, title = {{PLMaddon:} a power-law module for the Matlab {SBToolbox}}, url = {http://www.ncbi.nlm.nih.gov/pubmed/17495997}, volume = 23, year = 2007 }