Abstract
Biologists rely on phylogeny and homology to provide
continuity across phenotypic and genotypic space. For
much of this century, there has been a tacit or de facto
assumption that these two spaces are tightly correlated
because of natural selection, so that homologous (shared-
derived) phenotypes imply homologous underlying
genotypes. Instances of deeply conserved genetic identity
are cited to support this assumption, reflecting a prevailing
view of life as a ``computable'' phenomenon in which
phenotypes are regarded as the ephemeral products of a
quasi-permanent determinative genetic program. However,
selection acts on phenotypes, not genotypes, with no
theoretically necessary connection between them. Equiv-
alent genetic mechanisms may be associated with the
same phenotype and over time phenogenetic drift, that is,
drift in the relationship between genotypes and a given
phenotype, can occur, even when a trait is conserved by
strong and persistent selection. A corollary is that genetic
divergence does not necessarily imply adaptive or func-
tional distinction. Phenogenetic drift can make it more
difficult to understand evolution at the gene level than at
the trait level. With new genomic technologies, an ability
to interpret comparative genotypephenotype relation-
ships in terms of specific genetic variants, not just
variance, will become increasingly important in biology.
To meet this challenge, we must improve our under-
standing of the ``tempo and mode'' of phenogenetic drift.
...
The appropriate formal developments, or applications
of existing theory, will have to be made by persons such
as readers of TPB, who are qualified to do that (i.e., not
the current authors). Those who choose to tackle this
difficult issue will need to make their findings better
known beyond the rarefied circle of theoretical biologists,
to include those working in biomedicine or agriculture,
and the general public, who pay for it.
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