BibSonomyburst/author/HuopaniemiBibSonomy RSS feed for /author/Huopaniemi2012-02-16T08:49:26+01:00http://www.bibsonomy.org/bibtex/2ca0d9a9e98aeb1b6eee4dcdb88fdc047/dblpdblp2011-11-03T00:00:00+01:00dblp <span class="authorEditorList"><a href="/author/Scheirer">Eric D. Scheirer</a>, <a href="/author/Väänänen">Riitta Väänänen</a>, and <a href="/author/Huopaniemi">Jyri Huopaniemi</a> </span><em>IEEE Transactions on Multimedia</em> <em>1(3):237-250</em> (<em>1999</em>)Thu Nov 03 00:00:00 CET 2011IEEE Transactions on Multimedia3237-250AudioBIFS: Describing Audio Scences with MPEG-4 Multimedia Standard.11999dblp http://www.bibsonomy.org/bibtex/2eb4107d009a500068c1d90685744f59d/dblpdblp2011-10-25T00:00:00+02:00dblp <span class="authorEditorList"><a href="/author/Lokki">Tapio Lokki</a>, <a href="/author/Savioja">Lauri Savioja</a>, <a href="/author/Väänänen">Riitta Väänänen</a>, <a href="/author/Huopaniemi">Jyri Huopaniemi</a>, and <a href="/author/Takala">Tapio Takala</a> </span><em>IEEE Computer Graphics and Applications</em> <em>22(4):49-57</em> (<em>2002</em>)Tue Oct 25 00:00:00 CEST 2011IEEE Computer Graphics and Applications449-57Creating Interactive Virtual Auditory Environments.222002dblp http://www.bibsonomy.org/bibtex/2be54f0b3e68e3285c690f7377270b723/dblpdblp2011-06-16T00:00:00+02:00dblp <span class="authorEditorList"><a href="/author/Suvitaival">Tommi Suvitaival</a>, <a href="/author/Huopaniemi">Ilkka Huopaniemi</a>, <a href="/author/Oresic">Matej Oresic</a>, and <a href="/author/Kaski">Samuel Kaski</a> </span><em>ICANN 1, </em><em>volume 6791 of Lecture Notes in Computer Science, </em><em>page 209-216. </em><em>Springer, </em>(<em>2011</em>)Thu Jun 16 00:00:00 CEST 2011ICANN (1)conf/icann/2011-1209-216Lecture Notes in Computer ScienceCross-Species Translation of Multi-way Biomarkers.67912011dblp http://www.bibsonomy.org/bibtex/2916082073d28b2197ab859d4ec72e41d/dblpdblp2010-08-20T00:00:00+02:00dblp <span class="authorEditorList"><a href="/author/Huopaniemi">Ilkka Huopaniemi</a>, <a href="/author/Suvitaival">Tommi Suvitaival</a>, <a href="/author/Oresic">Matej Oresic</a>, and <a href="/author/Kaski">Samuel Kaski</a> </span><em>ECML/PKDD 1, </em><em>volume 6321 of Lecture Notes in Computer Science, </em><em>page 538-553. </em><em>Springer, </em>(<em>2010</em>)Fri Aug 20 00:00:00 CEST 2010ECML/PKDD (1)conf/pkdd/2010-1538-553Lecture Notes in Computer ScienceGraphical Multi-way Models.63212010dblp http://www.bibsonomy.org/bibtex/22cf6dbdf9b1b142d63363b99911ec975/dblpdblp2010-08-11T00:00:00+02:00dblp <span class="authorEditorList"><a href="/author/Huopaniemi">Ilkka Huopaniemi</a>, <a href="/author/Suvitaival">Tommi Suvitaival</a>, <a href="/author/Nikkilä">Janne Nikkilä</a>, <a href="/author/Oresic">Matej Oresic</a>, and <a href="/author/Kaski">Samuel Kaski</a> </span><em>Bioinformatics ISMB</em> <em>26(12):391-398</em> (<em>2010</em>)Wed Aug 11 00:00:00 CEST 2010Bioinformatics [ISMB]12391-398Multivariate multi-way analysis of multi-source data.262010dblp http://www.bibsonomy.org/bibtex/2778debd3d14799f4c56ea0584084d026/wnpxrzwnpxrz2010-06-07T21:03:16+02:00toread <span class="authorEditorList"><a href="/author/Huopaniemi">Ilkka Huopaniemi</a>, <a href="/author/Suvitaival">Tommi Suvitaival</a>, <a href="/author/Nikkilä">Janne Nikkilä</a>, <a href="/author/Oresic">Matej Oresic</a>, and <a href="/author/Kaski">Samuel Kaski</a> </span> (<em>2010</em>)Mon Jun 07 21:03:16 CEST 2010Multivariate multi-way analysis of multi-source data2010toread Motivation: Analysis of variance (ANOVA)-type methods are the default tool for the analysis of data with multiple covariates. These tools have been generalized to the multivariate analysis of high-throughput biological datasets, where the main challenge is the problem of small sample size and high dimensionality. However, the existing multi-way analysis methods are not designed for the currently increasingly important experiments where data is obtained from multiple sources. Common examples of such settings include integrated analysis of metabolic and gene expression profiles, or metabolic profiles from several tissues in our case, in a controlled multi-way experimental setup where disease status, medical treatment, gender and time-series are usual covariates. Results: We extend the applicability area of multivariate, multi-way ANOVA-type methods to multi-source cases by introducing a novel Bayesian model. The method is capable of finding covariate-related dependencies between the sources. It assumes the measurements consist of groups of similarly behaving variables, and estimates the multivariate covariate effects and their interaction effects for the discovered groups of variables. In particular, the method partitions the effects to those shared between the sources and to source-specific ones. The method is specifically designed for datasets with small sample sizes and high dimensionality. We apply the method to a lipidomics dataset from a lung cancer study with two-way experimental setup, where measurements from several tissues with mostly distinct lipids have been taken. The method is also directly applicable to gene expression and proteomics. Availability: An R-implementation is available at http://www.cis.hut.fi/projects/mi/software/multiWayCCA/ Contact: ilkka.huopaniemi@tkk.fi; samuel.kaski@tkk.fiScientific Commons: Multivariate multi-way analysis of multi-source data (2010), 2010 [Huopaniemi, Ilkka, Suvitaival, Tommi, Nikkilä, Janne, Oresic, Matej, Kaski, Samuel]http://www.bibsonomy.org/bibtex/27b4e07025e42d335c7315fcccee48356/dblpdblp2009-12-17T00:00:00+01:00dblp <span class="authorEditorList"><a href="/author/Huopaniemi">Ilkka Huopaniemi</a>, <a href="/author/Suvitaival">Tommi Suvitaival</a>, <a href="/author/Nikkilä">Janne Nikkilä</a>, <a href="/author/Oresic">Matej Oresic</a>, and <a href="/author/Kaski">Samuel Kaski</a> </span><em>Data Min. Knowl. Discov.</em> <em>19(2):261-276</em> (<em>2009</em>)Thu Dec 17 00:00:00 CET 2009Data Min. Knowl. Discov.2261-276Two-way analysis of high-dimensional collinear data.192009dblp dblphttp://www.bibsonomy.org/bibtex/2ea7bf100ecee388815d303d331c765d5/dblpdblp2009-08-31T00:00:00+02:00dblp <span class="authorEditorList"><a href="/author/Huopaniemi">Ilkka Huopaniemi</a>, <a href="/author/Suvitaival">Tommi Suvitaival</a>, <a href="/author/Nikkilä">Janne Nikkilä</a>, <a href="/author/Oresic">Matej Oresic</a>, and <a href="/author/Kaski">Samuel Kaski</a> </span><em>ECML/PKDD 1, </em><em>volume 5781 of Lecture Notes in Computer Science, </em><em>page 33. </em><em>Springer, </em>(<em>2009</em>)Mon Aug 31 00:00:00 CEST 2009ECML/PKDD (1)conf/pkdd/2009-133Lecture Notes in Computer ScienceTwo-Way Analysis of High-Dimensional Collinear Data.57812009dblp dblphttp://www.bibsonomy.org/bibtex/204a8fb0d94acefefb83f258d888f4fbf/dblpdblp2009-05-15T00:00:00+02:00dblp <span class="authorEditorList"><a href="/author/Eronen">Antti J. Eronen</a>, <a href="/author/Peltonen">V. T. Peltonen</a>, <a href="/author/Tuomi">J. T. Tuomi</a>, <a href="/author/Klapuri">Anssi Klapuri</a>, <a href="/author/Fagerlund">S. Fagerlund</a>, <a href="/author/Sorsa">T. Sorsa</a>, <a href="/author/Lorho">G. Lorho</a>, and <a href="/author/Huopaniemi">Jyri Huopaniemi</a> </span><em>IEEE Transactions on Audio, Speech &amp; Language Processing</em> <em>14(1):321-329</em> (<em>2006</em>)Fri May 15 00:00:00 CEST 2009IEEE Transactions on Audio, Speech & Language Processing1321-329Audio-based context recognition.142006dblp dblphttp://www.bibsonomy.org/bibtex/2cfc45030a05802fafd9500cbeb1e73c3/pagauthierpagauthier2009-03-10T17:56:28+01:00imported <span class="authorEditorList"><a href="/author/L. Savioja, J. Huopaniemi, T. Lokki, R. Väänänen"> L. Savioja, J. Huopaniemi, T. Lokki, R. Väänänen</a> </span><em>Journal of the Audio Engineering Society</em> (<em>1999</em>)Tue Mar 10 17:56:28 CET 2009Journal of the Audio Engineering Society675-705Creating interactive virtual acoustics environments471999imported AES Spatial Sound Anthology Part 2http://www.bibsonomy.org/bibtex/2bf7f1bd4b5650ede5fb0c57433cf2f79/ocelmaocelma2008-02-17T16:51:33+01:00imported <span class="authorEditorList"><a href="/author/Peltonen">Vesa Peltonen</a>, <a href="/author/Tuomi">Juha Tuomi</a>, <a href="/author/Klapuri">Anssi Klapuri</a>, <a href="/author/Huopaniemi">Jyri Huopaniemi</a>, and <a href="/author/Sorsa">Timo Sorsa</a> </span><em>Proc. of ICASSP, </em><em>Florida, USA, </em>(<em>May 2002</em>)Sun Feb 17 16:51:33 CET 2008Florida, USAProc. of ICASSPMayComputational Auditory Scene Recognition2002imported http://www.bibsonomy.org/bibtex/2882c62721a33f82268b4cb078d3f75d6/dblpdblp2006-08-21T00:00:00+02:00dblp <span class="authorEditorList"><a href="/author/Väänänen">Riitta Väänänen</a>, and <a href="/author/Huopaniemi">Jyri Huopaniemi</a> </span><em>IEEE Transactions on Multimedia</em> <em>6(5):661-675</em> (<em>2004</em>)Mon Aug 21 00:00:00 CEST 2006IEEE Transactions on Multimedia5661-675Advanced AudioBIFS: virtual acoustics modeling in MPEG-4 scene description.62004dblp dblp