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BINOCh: binding inference from nucleosome occupancy changes., , , and . Bioinform., 27 (13): 1867-1868 (2011)xMAN: extreme MApping of oligoNucleotides., , , and . BIOCOMP, page 631-637. CSREA Press, (2007)CRISPR Screens Identify Essential Cell Growth Mediators in BRAF Inhibitor-resistant Melanoma., , , , , , , , , and 7 other author(s). Genom. Proteom. Bioinform., 18 (1): 26-40 (2020)VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis., , , , , , , , , and 5 other author(s). BMC Bioinform., 19 (1): 135:1-135:14 (2018)Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis., , , , , , , , , and 1 other author(s). Nucleic Acids Res., 47 (Database-Issue): D729-D735 (2019)A Bayesian model for single cell transcript expression analysis on MERFISH data., , and . Bioinform., 35 (6): 995-1001 (2019)TISMO: syngeneic mouse tumor database to model tumor immunity and immunotherapy response., , , , , , , , , and 10 other author(s). Nucleic Acids Res., 50 (D1): 1391-1397 (2022)Improved design and analysis of CRISPR knockout screens., , , , , , , and . Bioinform., 34 (23): 4095-4101 (2018)ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline., , , , , , , , , and 6 other author(s). BMC Bioinform., (2016)Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse., , , , , , , , , and 4 other author(s). Nucleic Acids Res., 45 (Database-Issue): D658-D662 (2017)