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Personal omics profiling reveals dynamic molecular and medical phenotypes., , , , , , , , , and 31 other author(s). Cell, 148 (6): 1293--1307 (Mar 16, 2012)SEMplMe: a tool for integrating DNA methylation effects in transcription factor binding affinity predictions., and . BMC Bioinform., 23 (1): 317 (2022)High-resolution mapping and characterization of open chromatin across the genome., , , , , , , and . Cell, 132 (2): 311-22 (January 2008)Predicting the effects of SNPs on transcription factor binding affinity., , , , , , , , and . Bioinform., 36 (2): 364-372 (2020)A proximity-based graph clustering method for the identification and application of transcription factor clusters., , and . BMC Bioinform., 18 (1): 530:1-530:14 (2017)CGIMP: Real-time exploration and covariate projection for self-organizing map datasets., and . J. Open Source Softw., 4 (39): 1520 (2019)Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures., , , and . Bioinform., 30 (19): 2808-2810 (2014)Mango: a bias-correcting ChIA-PET analysis pipeline., , , and . Bioinform., 31 (19): 3092-3098 (2015)MapGL: inferring evolutionary gain and loss of short genomic sequence features by phylogenetic maximum parsimony., and . BMC Bioinform., 21 (1): 416 (2020)