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AutoFACT: An Automatic Functional Annotation and Classification Tool., , , and . BMC Bioinform., (2005)Building a genome database using an object-oriented approach., , , and . In Silico Biology, 2 (3): 213-217 (2002)Accounting for gene rate heterogeneity in phylogenetic inference., , and . Syst Biol, 56 (2): 194--205 (July 2007)Comparative analysis of organelle genomes, a biologist's view of computational challenges (abstract only).. RECOMB, page 203. ACM, (2001)A collection of programs for nucleic acid and protein analysis, written in FORTRAN 77 for IBM-PC compatible microcomputers., and . Nucleic Acids Res., 14 (1): 455-465 (1986)GOBASE: the organelle genome database., , , and . Nucleic Acids Res., 29 (1): 128-132 (2001)Skewed Base Compositions, Asymmetric Transition Matrices, and Phylogenetic Invariants., , and . J. Comput. Biol., 1 (1): 77-92 (1994)Calculating the evolutionary rates of different genes: a fast, accurate estimator with applications to maximum likelihood phylogenetic analysis., , and . Syst Biol, 54 (6): 900--915 (2005)TBestDB: a taxonomically broad database of expressed sequence tags (ESTs)., , , , , , , and . Nucleic Acids Res., 35 (Database-Issue): 445-451 (2007)GOBASE - a database of mitochondrial and chloroplast information., , , , , and . Nucleic Acids Res., 31 (1): 176-178 (2003)