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Software for Computing and Annotating Genomic Ranges., , , , , , , and . PLoS Comput. Biol., (2013)A graph-theoretic approach to testing associations between disparate sources of functional genomics data., , , and . Bioinform., 20 (18): 3353-3362 (2004)Local modeling of global interactome networks., , and . Bioinform., 21 (17): 3548-3557 (2005)Graphs in molecular biology., , , , and . BMC Bioinform., (2007)Bioinformatics with R. Chapman & Hall ; Taylor & Francis distributor, Boca Raton, Fla.; London, (2008)flowCore: a Bioconductor package for high throughput flow cytometry., , , , , , , , and . BMC Bioinform., (2009)gCMAP: user-friendly connectivity mapping with R., , , and . Bioinform., 30 (1): 127-128 (2014)A model-based background adjustment for oligonucleotide expression arrays, , , , and . Journal of the American Statistical Association, 99 (468): 909--917 (2004)Software for computing and annotating genomic ranges., , , , , , , and . PLoS Comput Biol, 9 (8): e1003118 (August 2013)Using GOstats to test gene lists for GO term association., and . Bioinform., 23 (2): 257-258 (2007)