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The COG database: an updated version includes eukaryotes., , , , , , , , , and 7 other author(s). BMC Bioinform., (2003)Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome, , , , , , , , , and 11 other author(s). Proc. Natl. Acad. Sci. U. S. A., (2003)Winnowing sequences from a database search., , , , and . RECOMB, page 50-58. ACM, (1999)ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes., , , , and . Nucleic Acids Res., 37 (Database-Issue): 448-454 (2009)Expanded microbial genome coverage and improved protein family annotation in the COG database., , , and . Nucleic Acids Res., 43 (Database-Issue): 261-269 (2015)Comparison of Phylogenetic Trees and Search for a Central Trend in the "Forest of Life"., , and . J. Comput. Biol., 18 (7): 917-924 (2011)Predictability of Evolutionary Trajectories in Fitness Landscapes., , and . PLoS Comput. Biol., (2011)Universal Pacemaker of Genome Evolution., , and . PLoS Comput. Biol., (2012)Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes., , , and . Briefings Bioinform., 5 (2): 131-149 (2004)EREM: Parameter Estimation and Ancestral Reconstruction by Expectation-Maximization Algorithm for a Probabilistic Model of Genomic Binary Characters Evolution., , , and . Adv. Bioinformatics, (2010)