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Computational design of auxotrophy-dependent microbial biosensors for combinatorial metabolic engineering experiments, and . PLoS One, (2011)iMAT: an integrative metabolic analysis tool., , and . Bioinform., 26 (24): 3140-3142 (2010)Metabolic network-based interpretation of gene expression data elucidates human cellular metabolism.. Biotechnology & genetic engineering reviews, (2010)Regulatory on/off minimization of metabolic flux changes after genetic perturbations, , and . Proc. Natl. Acad. Sci. USA, 102 (21): 7695--7700 (May 24, 2005)Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity, , , , , and . Proceedings of the National Academy of Sciences, 109 (1): 339--344 (Jan 3, 2012)Comparison of Protein-Protein Interaction Confidence Assignment Schemes., , , , and . Systems Biology and Regulatory Genomics, volume 4023 of Lecture Notes in Computer Science, page 39-50. Springer, (2005)QPath: a method for querying pathways in a protein-protein interaction network., , , and . BMC Bioinform., (2006)Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect., , , , and . PLoS Comput. Biol., (2011)An integrated computational approach for metabolic flux analysis coupled with inference of tandem-MS collisional fragments., and . Bioinform., 29 (23): 3045-3052 (2013)SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments., , , , and . ISMB/ECCB (Supplement of Bioinformatics), page 359-366. (2007)