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PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity., , , , and . BMC Bioinform., (2012)Accessing the SEED genome databases via Web services API: tools for programmers., , , , , , , and . BMC Bioinform., (2010)Combining de novo and reference-guided assembly with scaffold_builder., , , , , , and . Source Code Biol. Medicine, (2013)multiPhATE: bioinformatics pipeline for functional annotation of phage isolates., , , , , , , and . Bioinform., 35 (21): 4402-4404 (2019)Ten simple rules and a template for creating workflows-as-applications., , , , , , , , and . PLoS Comput. Biol., 18 (12): 1010705 (December 2022)PhANNs, a fast and accurate tool and web server to classify phage structural proteins., , , , , , and . PLoS Comput. Biol., 16 (11): 1007845 (November 2020)From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model, , , , , and . Frontiers in Microbiology, (Jun 17, 2016)SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models, , , , , , , , , and 3 other author(s). PLoS ONE, 7 (10): e48053+ (Oct 24, 2012)Identification and removal of ribosomal RNA sequences from metatranscriptomes., , and . Bioinform., 28 (3): 433-435 (2012)PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive., , and . Bioinform., 33 (15): 2389-2391 (2017)