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A comparison of scoring functions for protein sequence profile alignment., and . Bioinform., 20 (8): 1301-1308 (2004)Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase., , , , , , , , , and 29 other author(s). Database J. Biol. Databases Curation, (2009)Active site prediction using evolutionary and structural information., , , , and . Bioinform., 26 (5): 617-624 (2010)Functional Classification Using Phylogenomic Inference., and . PLoS Comput. Biol., (2006)Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families., , , , , and . ISMB, page 47-55. AAAI, (1993)Berkeley PHOG: PhyloFacts orthology group prediction web server., , , , and . Nucleic Acids Res., 37 (Web-Server-Issue): 84-89 (2009)Subfamily HMMS in Functional Genomics., , , , and . Pacific Symposium on Biocomputing, World Scientific, (2005)ResBoost: characterizing and predicting catalytic residues in enzymes., , , , , and . BMC Bioinform., (2009)SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction., , , , , and . Nucleic Acids Res., 38 (Web-Server-Issue): 29-34 (2010)Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars., , , , , , and . CPM, volume 807 of Lecture Notes in Computer Science, page 289-306. Springer, (1994)