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ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry.

, , , , , , , , , , , and . BMC Bioinform., (2011)

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Tandem Mass Spectrometry Protein Identification on a PC Grid., , , , , and . HealthGrid, volume 126 of Studies in Health Technology and Informatics, page 3-12. IOS Press, (2007)Proteome organization in a genome-reduced bacterium, , , , , , , , , and 17 other author(s). Science, 326 (5957): 1235--1240 (2009)Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast, , , , , , , , , and . Mol. Syst. Biol., (2013)The quantitative and condition-dependent Escherichia coli proteome, , , , , , , , , and . Nat. Biotechnol., 34 (1): 104--110 (January 2016)Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline, , and . Nat. Protoc., (2014)Differential glucose repression in common yeast strains in response to HXK2 deletion, , , , , , , , and . FEMS Yeast Res., (2010)Statistical Approach to Protein Quantification, , , , , , , and . Molecular & Cellular Proteomics, 13 (2): 666-677 (2014)Prequips - an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data., , , , , , , and . Bioinform., 25 (5): 682-683 (2009)PCfun: a hybrid computational framework for systematic characterization of protein complex function., , , , , , , , , and 4 other author(s). Briefings Bioinform., (2022)Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics., , , , , , , , , and 4 other author(s). BMC Bioinform., (2008)