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Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly.

, , , , , and . J. Comput. Biol., 20 (4): 359-371 (2013)

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An Introduction to Bioinformatics Algorithms, and . MIT Press, Cambridge, MA, (2004)De novo identification of repeat families in large genomes., , and . ISMB (Supplement of Bioinformatics), page 351-358. (2005)Reconstructing tumor amplisomes., and . ISMB/ECCB (Supplement of Bioinformatics), page 265-273. (2004)To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution)., and . SODA, page 304-313. ACM/SIAM, (1996)dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes., , and . RECOMB, volume 8394 of Lecture Notes in Computer Science, page 265-279. Springer, (2014)Towards a Computational Theory of Genome Rearrangements., and . Computer Science Today, volume 1000 of Lecture Notes in Computer Science, Springer, (1995)From de Bruijn Graphs to Rectangle Graphs for Genome Assembly., , , and . WABI, volume 7534 of Lecture Notes in Computer Science, page 249-261. Springer, (2012)Colored de Bruijn Graphs and the Genome Halving Problem., and . IEEE ACM Trans. Comput. Biol. Bioinform., 4 (1): 98-107 (2007)dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes., , and . J. Comput. Biol., 22 (6): 528-545 (2015)Mutation-Tolerant Protein Identification by Mass Spectrometry., , and . J. Comput. Biol., 7 (6): 777-787 (2000)