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BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains.

, , , and . Bioinform., 20 (17): 3289-3291 (2004)

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Graphical rule-based representation of signal-transduction networks., , and . SAC, page 133-140. ACM, (2005)Symbolic Model Checking of Signaling Pathways in Pancreatic Cancer., , , , and . BICoB, page 245-. ISCA, (2011)Combination treatment optimization using a pan-cancer pathway model., , , , , and . PLoS Comput. Biol., (2021)Compartmental Rule-based Modeling of Biochemical Systems., , and . WSC, page 908-919. IEEE, (2009)Regulatory network analysis acceleration with reconfigurable hardware., , , , , , and . EMBC, page 149-152. IEEE, (2011)Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway., , , , , and . CMSB, volume 5307 of Lecture Notes in Computer Science, page 231-250. Springer, (2008)Carbon-fate maps for metabolic reactions., , , , , and . Bioinform., 23 (23): 3193-3199 (2007)BioNetGen 2.2: advances in rule-based modeling., , , , , , , , , and . Bioinform., 32 (21): 3366-3368 (2016)Toward a comprehensive language for biological systems. BMC Biology, 9 (1): 68+ (Oct 17, 2011)Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories., , , , , , and . PLoS Comput. Biol., (2016)