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Optimizing for success: a new score function for distantly related protein sequence comparison.

, and . RECOMB, page 177-182. ACM, (2000)

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Evolutionary Perspectives on Protein Thermodynamics.. International Conference on Computational Science, volume 3039 of Lecture Notes in Computer Science, page 718-727. Springer, (2004)Deciphering the Swine-Flu Pandemics of 1918 and 2009., , , and . RECOMB, volume 6044 of Lecture Notes in Computer Science, page 572-573. Springer, (2010)In Silico Biology., , , and . Pacific Symposium on Biocomputing, page 477-480. World Scientific Publishing, (2010)Assessing the Accuracy of Ancestral Protein Reconstruction Methods., , , and . PLoS Comput. Biol., (2006)Beyond mutation matrices: physical-chemistry based evolutionary models., , and . RECOMB, page 140-145. ACM, (1998)The Evolution of Collective Restraint: Policing and Obedience among Non-conjugative Plasmids., , , and . PLoS Comput. Biol., (2013)Identifying Changes in Selective Constraints: Host Shifts in Influenza., , , and . PLoS Comput. Biol., (2009)Structures, Phylogenies, and Genomes: The Integrated Study of Protein Evolution - Session Introduction., , and . Pacific Symposium on Biocomputing, page 164-166. (2001)In silico evolution of chemotaxis., and . ALIFE, page 769. MIT Press, (2008)Performance of an iterated T-HMM for homology detection., and . Bioinform., 20 (14): 2175-2180 (2004)