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PHYLIP general information
to software Felsenstein phylogeny PHYLIP by karinnadrowski on Apr 3, 2009, 1:42 PM
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ouch.pdf (application/pdf Object)
to contrast ouch phylogeny brownian motion by karinnadrowski on Mar 26, 2009, 10:05 PM
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CRAN - Package picante
to contrast indipendent phylogeny picante Garland by karinnadrowski on Mar 26, 2009, 9:49 PM
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Phylomatic
to phylogeny by karinnadrowski on Dec 11, 2008, 2:33 PM
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Spermatopsida
to phylogeny plants by karinnadrowski on Dec 11, 2008, 8:59 AM
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A Tree of Life
to phylogeny by karinnadrowski on Dec 11, 2008, 8:55 AM
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Department of Biology: PDAP: Phenotypic Diversity Analysis Programs
to Garland PDAP Ted diversity phylogeny by karinnadrowski on Oct 14, 2008, 9:51 AM
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Department of Biology:
to Garland Ted behavior behaviour evolution phylogeny pika by karinnadrowski on Oct 14, 2008, 9:48 AM
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The PhyloCode
to 4dave phylogeny taxonomy by ludaesch on Sep 26, 2007, 7:21 AM
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MorphoBank
to biology homology phylogeny ppod by ludaesch on Sep 11, 2007, 7:31 PM
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Phylogenetic systematics, a.k.a. evolutionary trees
to biology cladistics evolution phylogenetics phylogeny systematics taxonomy tutorial by ludaesch on Jun 3, 2007, 5:33 PM
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publications

(50)

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Quartet-based phylogenetic inference: improvements and limits.
V. Ranwez, and O. Gascuel Mol Biol Evol 18(6):1103--1116 (June 2001)
to Algorithms; Genetic; Models, Phylogeny by psaraiva and 1 other user on Jan 4, 2012, 2:44 PM
BibTeX (0)
Evolutionary trees from DNA sequences: a maximum likelihood approach.
J. Felsenstein J Mol Evol 17(6):368--376 (1981)
to Base Biological Biological; Computers; DNA, Evolution; Mathematics; Models, Phylogeny Sequence; genetics; by psaraiva and 2 other users on Jan 4, 2012, 2:44 PM
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Identification and characterization of an Azotobacter vinelandii type I secretion system responsible for export of the AlgE-type mannuronan C-5-epimerases.
M. Gimmestad, M. Steigedal, H. Ertesvag, S. Moreno, B. E. Christensen, G. Espin, and S. Valla J. Bacteriol. 188(15):5551-60 (2006)
to & ; Azotobacter Bacterial Base Carbohydrate Conditioned/metabolism Culture Data Epimerases/*metabolism/secretion Genes, Genome, Gov't Media, Molecular Non-U.S. Phylogeny Proteins/genetics/metabolism/*physiology/secretion Research Sequence Support, development/*metabolism vinelandii/growth by pawelsikorski on Nov 4, 2011, 1:47 PM
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Phylogeny derived from homodimeric endonuclease correlates with its pre-RNA substrates
? (2011)
to Endonuclease Homodimeric Intron Likelihood Maximum Methanogen Method Noncoding Phylogeny RNA by journals on Jul 22, 2011, 11:16 AM
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A functional two-partner secretion system contributes to adhesion of Neisseria meningitidis to epithelial cells
Corinna Schmitt, David Turner, Maria Boesl, Marion Abele, Matthias Frosch, and Oliver Kurzai Journal of Bacteriology 189(22):7968--7976 (November 2007)PMID: 17873034 .
to Adhesion, Bacterial Cell Cells, Epithelial Humans, Line, Neisseria Phylogeny Proteins, ag_kurzai meningitidis, by hymi on Apr 7, 2011, 3:44 PM
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A step by step guide to phylogeny reconstruction
C. Jill Harrison, and J.A. Langdale The Plant Journal 45(4):561--572 (2006)
to phylogeny by balajior and 1 other user on Jan 12, 2011, 3:25 PM
BibTeX (0)
Evolution of melanocortin receptors in teleost fish: the melanocortin type 1 receptor
Y. Selz, I. Braasch, C. Hoffmann, C. Schmidt, C. Schultheis, M. Schartl, and J. N. Volff Gene 401(1-2):114-22 (October 2007)Selz, Yvonne Braasch, Ingo Hoffmann, Carsten Schmidt, Cornelia Schultheis, Christina Schartl, Manfred Volff, Jean-Nicolas Research Support, Non-U.S. Gov'...
Selz, Yvonne Braasch, Ingo Hoffmann, Carsten Schmidt, Cornelia Schultheis, Christina Schartl, Manfred Volff, Jean-Nicolas Research Support, Non-U.S. Gov't Netherlands Gene Gene. 2007 Oct 15;4011-2:114-22. Epub 2007 Jul 17.
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to *Evolution, 1/chemistry/genetics/*metabolism Acid Amino Analysis, Animals Cell Cloning, Cyprinodontiformes/*genetics Data Dosage Experimental Gene Genetic Homology, Line Melanocortin, Melanocortins/agonists/genetics/metabolism Melanoma, Melanophores/metabolism Models, Molecular Oryzias/*genetics Phylogeny Protein Sequence Structure, Substitution Tertiary Type Zebrafish/*genetics Receptor by pharmawuerz on Dec 14, 2010, 6:12 PM
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Optimal phylogenetic reconstruction
Constantinos Daskalakis, Elchanan Mossel, and Sébastien Roch STOC, page 159-168. ACM, (2006)
to imported phylogeny by ytyoun and 1 other user on Oct 25, 2010, 7:25 PM
DOI | BibTeX (0)
A step by step guide to phylogeny reconstruction
C. Jill Harrison, and J.A. Langdale The Plant Journal 45(4):561--572 (2006)
to bioinformatics phylogeny by ytyoun and 1 other user on Oct 16, 2010, 2:02 AM
DOI | BibTeX (0)
Bayesian estimation of divergence times from large sequence alignments.
S. Guindon Molecular Biology and Evolution 27(8):1768-81 (2010)
to from:stephane.guindon phylogeny by compevol and 1 other user on Oct 12, 2010, 2:21 AM
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Human language as a culturally transmitted replicator
Mark Pagel Nature Reviews Genetics (June 2009)
to 2009 cultural dynamics language pagel phylogenesis phylogeny by vittorio.loreto on Apr 1, 2010, 1:50 PM
URL | DOI | BibTeX (0)
Stochastic Models and Descriptive Statistics for Phylogenetic Trees, from Yule to Today
D. J. Aldous Statistical Science (2001)
to 1924 2001 aldous balanced phylogeny trees yule by vittorio.loreto and 2 other users on Feb 27, 2010, 3:18 PM
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SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.
Gascuel O. Gouy M. (2009)
to from:stephane.guindon phylogeny seaview software by compevol on Feb 6, 2010, 8:31 PM
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Evolution of plant MADS box transcription factors: evidence for shifts in selection associated with early angiosperm diversification and concerted gene duplications
Hongyan Shan, Laura Zahn, Stephane Guindon, P Kerr Wall, Hongzhi Kong, Hong Ma, Claude W DePamphilis, and Jim Leebens-Mack (2009)
to from:stephane.guindon phylogeny by compevol on Feb 6, 2010, 8:30 PM
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Erasing the methyl mark: histone demethylases at the center of cellular differentiation and disease.
Paul A C Cloos, Jesper Christensen, Karl Agger, and Kristian Helin Genes Dev. 22(9):1115-40 (May 2008)
to Aging Animals Cell_Differentiation Histones,_metabolism Humans Methylation Models,_Biological Neoplasms,_metabolism/pathology Oxidoreductases,_N-Demethylating,_classification/metabolism Phylogeny by denilw on Jan 26, 2010, 8:35 PM
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Species diversity and seasonality of free-living ticks Acari: Ixodidae in the natural habitat of wild Marsh deer Blastocerus dichotomus in Southeastern Brazil.
Matias P J Szabó, Márcio B Castro, Hernani G C Ramos, Marcos V Garcia, Karina C Castagnolli, Adriano Pinter, Viviane A Veronez, Geórgia M Magalhães, José Maurício B Duarte, and Marcelo B Labruna Veterinary Parasitology 143(2):147--154 (January 2007)
to Phylogeny Animals epidemiology/veterinary parasitology Ixodidae Domestic Biodiversity epidemiology classification/growth/&/development PopulationDynamics Amblyommatriste Wild Demography PopulationDensity Brazil Seasons Amblyommacajennense TickInfestations Deer by uvesco on Jan 14, 2010, 5:51 PM
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Detection and identification of spotted fever group rickettsiae in ticks collected in southern Croatia.
Volga Punda-Polic, Miroslav Petrovec, Tomi Trilar, Darja Duh, Nikola Bradaric, Zorana Klismanic, and Tatjana Avsic-Zupanc Experimental and Applied Acarology 28(1-4):169--176 (2002)
to Mitochondrial Animals RickettsiaInfections chemistry/genetics Sheep epidemiology/microbiology/transmission 16S genetics/isolation/&/purification PolymeraseChainReaction Bacterial Phylogeny Ribosomal Tick-BorneDiseases Goats Ixodidae epidemiology AnimalDiseases Cattle RNA Rickettsia DNA Croatia epidemiology/microbiology/transmission/veterinary microbiology Prevalence by uvesco on Jan 14, 2010, 5:49 PM
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Anaplasma marginale Rickettsiales: Anaplasmataceae: recent advances in defining host-pathogen adaptations of a tick-borne rickettsia.
K. M. Kocan, J. de la Fuente, E. F. Blouin, and J. C. Garcia-Garcia Parasitology (2004)
to ArachnidVectors Phylogeny Animals Erythrocytes Host-ParasiteInteractions classification/physiology CattleDiseases Cattle Anaplasmosis Anaplasmamarginale microbiology/prevention/&/control/transmission Ticks microbiology by uvesco on Jan 14, 2010, 5:47 PM
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Integrating phylogenetics and environmental niche models to explore speciation mechanisms in dendrobatid frogs.
Catherine H Graham, Santiago R Ron, Juan C Santos, Christopher J Schneider, and Craig Moritz Evolution 58(8):1781--1793 (August 2004)
to AnalysisofVariance Environment Phylogeny Animals Ecuador Climate Anura Models Demography classification/genetics Biological SpeciesSpecificity Geography by uvesco on Jan 14, 2010, 5:44 PM
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Identification of a new Borrelia species among small mammals in areas of northern Spain where Lyme disease is endemic.
Horacio Gil, Marta Barral, Raquel Escudero, Ana L García-Pérez, and Pedro Anda Applied and Environmental Microbiology 71(3):1336--1345 (March 2005)
to Phylogeny Ixodes Animals BaseSequence CrossReactions Mammals LymeDisease Spain Humans Arvicolinae MolecularSequenceData blood DiseaseReservoirs classification/genetics/immunology/isolation/&/purification genetics Antibodies BorreliaburgdorferiGroup SpeciesSpecificity immunology/microbiology DNA Bacterial microbiology by uvesco on Jan 14, 2010, 5:44 PM
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