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Gene function in early mouse embryonic stem cell differentiation
K Hailesellasse Sene, C J Porter, G Palidwor, C Perez-Iratxeta, E M Muro, P A Campbell, M A Rudnicki, and M A Andrade-Navarro BMC Genomics (2007)
to imported by cchen63 on Nov 22, 2009, 10:08 PM
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A spectrum of FOXC1 mutations suggests gene dosage as a mechanism for developmental defects of the anterior chamber of the eye
D Y Nishimura, C C Searby, W L Alward, D Walton, J E Craig, D A Mackey, K Kawase, A B Kanis, S R Patil, E M Stone, and V C Sheffield Am J Hum Genet 68(2):364-372 (February 2001)
to imported by cchen63 on Nov 22, 2009, 9:57 PM
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Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
Segal, M Shapira, A Regev, D Pe'er, D Botstein, D Koller, and N Friedman Nat Genet 34(2):166-176 (June 2003)
to imported by cchen63 and 1 other user on Nov 21, 2009, 10:40 PM
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Physical network models
C H Yeang, T Ideker, and T Jaakkola J Comput Biol 11(2-3):243-262 (2004)
to network physical by cchen63 and 1 other user on Nov 19, 2009, 10:18 PM
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Interlinked fast and slow positive feedback loops drive reliable cell decisions
Brandman, J E Ferrell, R Li, and T Meyer Science 310(5747):496-498 (October 2005)
to cell decisions loop by cchen63 on Nov 19, 2009, 10:17 PM
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A gene regulatory network in mouse embryonic stem cells
Zhou, H Chipperfield, D A Melton, and W H Wong Proc Natl Acad Sci U S A 104(42):16438-16443 (October 2007)
to gene mESC regulatory-network by cchen63 on Nov 19, 2009, 10:17 PM
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Cytoscape: a software environment for integrated models of biomolecular interaction networks
Shannon, A Markiel, O Ozier, N S Baliga, J T Wang, D Ramage, N Amin, B Schwikowski, and T Ideker Genome Res 13(11):2498-2504 (November 2003)
to cytoscape by cchen63 and 2 other users on Nov 19, 2009, 10:16 PM
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Embryonic stem cell lines derived from human blastocysts
J A Thomson, J Itskovitz-Eldor, S S Shapiro, M A Waknitz, J J Swiergiel, V S Marshall, and J M Jones Science 282(5391):1145-1147 (November 1998)
to ESC by cchen63 on Nov 19, 2009, 10:16 PM
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The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins
Dehal, Y Satou, R K Campbell, J Chapman, B Degnan, A De Tomaso, B Davidson, A Di Gregorio, M Gelpke, D M Goodstein, N Harafuji, K E Hastings, I Ho, K Hotta, W Huang, T Kawashima, P Lemaire, D Martinez, I A Meinertzhagen, S Necula, M Nonaka, N Putnam, S Rash, H Saiga, M Satake, A Terry, L Yamada, H G Wang, S Awazu, K Azumi, J Boore, M Branno, S Chin-Bow, R DeSantis, S Doyle, P Francino, D N Keys, S Haga, H Hayashi, K Hino, K S Imai, K Inaba, S Kano, K Kobayashi, M Kobayashi, B I Lee, K W Makabe, C Manohar, G Matassi, M Medina, Y Mochizuki, S Mount, T Morishita, S Miura, A Nakayama, S Nishizaka, H Nomoto, F Ohta, K Oishi, I Rigoutsos, M Sano, A Sasaki, Y Sasakura, E Shoguchi, T Shin i, A Spagnuolo, D Stainier, M M Suzuki, O Tassy, N Takatori, M Tokuoka, K Yagi, F Yoshizaki, S Wada, C Zhang, P D Hyatt, F Larimer, C Detter, N Doggett, T Glavina, T Hawkins, P Richardson, S Lucas, Y Kohara, M Levine, N Satoh, and D S Rokhsar Science 298(5601):2157-2167 (December 2002)
to imported by cchen63 and 1 other user on Nov 19, 2009, 10:16 PM
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Establishment in culture of pluripotential cells from mouse embryos
M J Evans, and M H Kaufman Nature 292(5819):154-156 (July 1981)
to mESC by cchen63 on Nov 19, 2009, 10:15 PM
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A core Klf circuitry regulates self-renewal of embryonic stem cells
Jiang, Y S Chan, Y H Loh, J Cai, G Q Tong, C A Lim, P Robson, S Zhong, and H H Ng Nat Cell Biol 10(3):353-360 (March 2008)
to esc kfl4 by cchen63 on Nov 19, 2009, 10:15 PM
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Predicting expression patterns from regulatory sequence in Drosophila segmentation
Segal, T Raveh-Sadka, M Schroeder, U Unnerstall, and U Gaul Nature 451(7178):535-540 (January 2008)
to seq2exp by cchen63 and 2 other users on Nov 19, 2009, 10:15 PM
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A gene-coexpression network for global discovery of conserved genetic modules
J M Stuart, E Segal, D Koller, and S K Kim Science 302(5643):249-255 (October 2003)
to co-expression gene network by cchen63 and 2 other users on Nov 19, 2009, 10:14 PM
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Inferring biomolecular regulatory networks from phase portraits of time-series expression profiles
K H Cho, J R Kim, S Baek, H S Choi, and S M Choo FEBS Lett 580(14):3511-3518 (June 2006)
to correlation expression network by cchen63 on Nov 19, 2009, 10:13 PM
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Inferring gene networks from time series microarray data using dynamic Bayesian networks
S Y Kim, S Imoto, and S Miyano Brief Bioinform 4(3):228-235 (September 2003)
to bayesian networks by cchen63 and 1 other user on Nov 19, 2009, 10:13 PM
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Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
Husmeier Bioinformatics 19(17):2271-2282 (November 2003)
to bayesian by cchen63 and 1 other user on Nov 19, 2009, 10:12 PM
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Functional discovery via a compendium of expression profiles
T R Hughes, M J Marton, A R Jones, C J Roberts, R Stoughton, C D Armour, H A Bennett, E Coffey, H Dai, Y D He, M J Kidd, A M King, M R Meyer, D Slade, P Y Lum, S B Stepaniants, D D Shoemaker, D Gachotte, K Chakraburtty, J Simon, M Bard, and S H Friend Cell 102(1):109-126 (July 2000)
to expression by cchen63 on Nov 19, 2009, 10:12 PM
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Reverse engineering cellular networks
A A Margolin, K Wang, W K Lim, M Kustagi, I Nemenman, and A Califano Nat Protoc 1(2):662-671 (2006)
to engineering reverse by cchen63 on Nov 19, 2009, 10:12 PM
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Stability analysis of genetic regulatory networks with multiple time delays
F X Wu Conf Proc IEEE Eng Med Biol Soc (2007)
to gene network time-lagged by cchen63 on Nov 19, 2009, 10:11 PM
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The strength of selection on ultraconserved elements in the human genome
C T Chen, J C Wang, and B A Cohen Am J Hum Genet 80(4):692-704 (April 2007)
to genome human by cchen63 on Nov 19, 2009, 10:11 PM
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