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Bayesian coalescent inference of major human mitochondrial DNA haplogroup expansions in Africa.
QD Atkinson, RD Gray, and AJ Drummond Proc Biol Sci (2008 Sep 30)
to from:alexei.drummond imported by compevol and 1 other user on Aug 21, 2011, 10:09 AM
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A Bayesian phylogenetic method to estimate unknown sequence ages
B. Shapiro, S.Y.W. Ho, A.J. Drummond, M.A. Suchard, O.G. Pybus, and A. Rambaut Molecular Biology and Evolution 28(2):879--887 (2011)
to from:alexei.drummond imported by compevol and 1 other user on Aug 21, 2011, 10:08 AM
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Epidemic dynamics revealed in dengue evolution
SN Bennett, AJ Drummond, DD Kapan, MA Suchard, JL Muñoz-Jordán, OG Pybus, EC Holmes, and DJ Gubler Molecular biology and evolution 27(4):811 (2010)
to phylodynamics from:alexei.drummond by compevol and 1 other user on Aug 21, 2011, 10:08 AM
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Bayesian random local clocks, or one rate to rule them all
A.J. Drummond, and M.A. Suchard BMC biology 8(1):114 (2010)
to bayesian from:alexei.drummond by compevol and 1 other user on Aug 21, 2011, 10:07 AM
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Extinction Times in Autocatalytic Systems
P.D. Drummond, T.G. Vaughan, and A.J. Drummond The Journal of Physical Chemistry A (2010)
to from:alexei.drummond autocatalytic by compevol and 1 other user on Aug 21, 2011, 10:07 AM
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The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography
M. Bunce, TH Worthy, MJ Phillips, RN Holdaway, E. Willerslev, J. Haile, B. Shapiro, RP Scofield, A. Drummond, P.J.J. Kamp, and others Proceedings of the National Academy of Sciences 106(49):20646 (2009)
to moa from:alexei.drummond by compevol and 1 other user on Aug 21, 2011, 10:05 AM
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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
S. Guindon, JF Dufayard, V. Lefort, M. Anisimova, W. Hordijk, and O. Gascuel Systematic Biology 59(3):307-321 (2010)
to from:stephane.guindon by compevol and 1 other user on Apr 15, 2011, 3:22 AM
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Bayesian estimation of divergence times from large sequence alignments.
S. Guindon Molecular Biology and Evolution 27(8):1768-81 (2010)
to from:stephane.guindon phylogeny by compevol and 1 other user on Oct 12, 2010, 2:21 AM
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Bayesian estimation of divergence times from large sequence alignments.
Stephane Guindon Molecular Biology and Evolution 27(8):1768-81 (2010)
to from:stephane.guindon by compevol and 1 other user on Oct 12, 2010, 1:54 AM
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Bayesian phylogeography finds its roots
Lemey, A Rambaut, A J Drummond, and M A Suchard PLoS Comput Biol (September 2009)
to Bayesian phylogeography from:alexei.drummond by compevol and 3 other users on Sep 28, 2010, 1:17 AM
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Bayesian inference of species trees from multilocus data
Heled, and A J Drummond Mol Biol Evol 27(3):570-580 (March 2010)
to coalescent bayesian phylogenetics from:alexei.drummond multispecies-coalescent by compevol and 1 other user on Sep 28, 2010, 1:17 AM
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Accommodating the effect of ancient DNA damage on inferences of demographic histories
Rambaut, S Y Ho, A J Drummond, and B Shapiro Mol Biol Evol 26(2):245-248 (February 2009)
to coalescent bayesian from:alexei.drummond by compevol and 1 other user on Sep 28, 2010, 1:16 AM
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SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.
Gascuel O. Gouy M. (2009)
to from:stephane.guindon phylogeny seaview software by compevol on Feb 6, 2010, 8:31 PM
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Evolution of plant MADS box transcription factors: evidence for shifts in selection associated with early angiosperm diversification and concerted gene duplications
Hongyan Shan, Laura Zahn, Stephane Guindon, P Kerr Wall, Hongzhi Kong, Hong Ma, Claude W DePamphilis, and Jim Leebens-Mack (2009)
to from:stephane.guindon phylogeny by compevol on Feb 6, 2010, 8:30 PM
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Computing the Distribution of a Tree Metric
David Bryant, and Mike Steel IEEE/ACM Transactions on Computational Biology and Bioinformatics 6(3):420-426 (July 2009)
to from:davidjamesbryant by compevol and 2 other users on Nov 20, 2009, 7:12 AM
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Species delimitation and phylogeny of a New Zealand plant species radiation
H. Meudt, P. Lockhart, and D. Bryant BMC Evolutionary Biology (May 2009)
to from:davidjamesbryant by compevol and 1 other user on Nov 20, 2009, 7:07 AM
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Properties of consensus methods for inferring species trees from gene trees
J. Degnan, M. DeGiorgio, D. Bryant, and N. Rosenberg Systematic Biology (2009)
to from:davidjamesbryant by compevol on May 14, 2009, 11:53 PM
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Hadamard phylogenetic methods and the n-taxon process.
David Bryant Bull Math Biol 71(2):339-351 (February 2009)
to from:davidjamesbryant by compevol on May 14, 2009, 11:47 PM
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Language Phylogenies Reveal Expansion Pulses and Pauses in Pacific Settlement
R. D. Gray, A. J. Drummond, and S. J. Greenhill Science 323(5913):479-483 (January 2009)
to from:alexei.drummond by compevol and 5 other users on May 14, 2009, 11:44 PM
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Budgeted Phylogenetic Diversity on Circular Split Systems
Bui Quang Minh, Fabio Pardi, Steffen Klaere, and Arndt von Haeseler IEEE/ACM Trans. Comput. Biol. Bioinform. 6(1):22-29 (January 2009)
to biodiversity_conservation budget_contraint dynamic_programming phylogenetic_diversity phylogenetic_network split_system by compevol and 2 other users on May 14, 2009, 11:43 PM
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