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Sequence
Algorithms,
DNA,
Software,
Alignment,
Genome,
Analysis,
Mapping,
Sequence,
Contig
Animals,
Data,
Base
Computational
Molecular
Biology,
Models,
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No matching items.
The phusion assembler
James C Mullikin
, and
Zemin Ning
.
Genome Res
13(1):81--90
(
January 2003
)
James C Mullikin
, and
Zemin Ning
.
Genome Res
13(1):81--90
(
January 2003
)
5 years and 9 months ago
by
dzerbino
1
Animals,
Biology,
Caenorhabditis
Computational
Contig
Genome,
Mapping,
Mice
Software,
elegans,
Animals,
Biology,
Caenorhabditis
Computational
Contig
Genome,
Mapping,
Mice
Software,
elegans,
(0)
URL
DOI
TeX
ARACHNE: a whole-genome shotgun assembler
Serafim Batzoglou
,
David B Jaffe
,
Ken Stanley
,
Jonathan Butler
,
Sante Gnerre
,
Evan Mauceli
,
Bonnie Berger
,
Jill P Mesirov
, and
Eric S Lander
.
Genome Res
12(1):177--89
(
January 2002
)
Serafim Batzoglou
,
David B Jaffe
,
Ken Stanley
,
Jonathan Butler
,
Sante Gnerre
,
Evan Mauceli
,
Bonnie Berger
,
Jill P Mesirov
, and
Eric S Lander
.
Genome Res
12(1):177--89
(
January 2002
)
5 years and 9 months ago
by
dzerbino
2
Algorithms,
Alignment,
Animals,
Bacterial,
Consensus
Contig
Drosophila
Fungal,
Genome,
Haemophilus
Human,
Humans
Mapping,
Saccharomyces
Sequence
Sequence,
Software,
cerevisiae,
influenzae,
melanogaster,
Algorithms,
Alignment,
Animals,
Bacterial,
Consensus
Contig
Drosophila
Fungal,
Genome,
Haemophilus
Human,
Humans
Mapping,
Saccharomyces
Sequence
Sequence,
Software,
cerevisiae,
influenzae,
melanogaster,
(0)
URL
DOI
TeX
PCAP: a whole-genome assembly program
Xiaoqiu Huang
,
Jianmin Wang
,
Srinivas Aluru
,
Shiaw-Pyng Yang
, and
LaDeana Hillier
.
Genome Res
13(9):2164--70
(
September 2003
)
Xiaoqiu Huang
,
Jianmin Wang
,
Srinivas Aluru
,
Shiaw-Pyng Yang
, and
LaDeana Hillier
.
Genome Res
13(9):2164--70
(
September 2003
)
5 years and 9 months ago
by
dzerbino
1
Algorithms,
Alignment,
Animals,
Biology,
Computational
Contig
Genome,
Humans
Mapping,
Mice,
Sequence
Software,
Algorithms,
Alignment,
Animals,
Biology,
Computational
Contig
Genome,
Humans
Mapping,
Mice,
Sequence
Software,
(0)
URL
DOI
TeX
Aligning multiple genomic sequences with the threaded blockset aligner
Mathieu Blanchette
,
W James Kent
,
Cathy Riemer
,
Laura Elnitski
,
Arian F A Smit
,
Krishna M Roskin
,
Robert Baertsch
,
Kate Rosenbloom
,
Hiram Clawson
,
Eric D Green
,
David Haussler
, and
Webb Miller
.
Genome Res
14(4):708--15
(
April 2004
)
Mathieu Blanchette
,
W James Kent
,
Cathy Riemer
,
Laura Elnitski
,
Arian F A Smit
,
Krishna M Roskin
,
Robert Baertsch
,
Kate Rosenbloom
,
Hiram Clawson
,
Eric D Green
,
David Haussler
, and
Webb Miller
.
Genome Res
14(4):708--15
(
April 2004
)
5 years and 9 months ago
by
dzerbino
1
Alignment,
Animals,
Base
Biology,
Cats,
Cattle,
Computational
Computer
Data,
Dogs,
Evaluation
Evolution,
Family,
Genes,
Genome,
Homeobox,
Human
Humans,
Mice,
Molecular
Molecular,
Multigene
Proteins,
Rats,
Ribosomal
Sequence
Sequence,
Simulation,
Software,
Studies,
fos,
Alignment,
Animals,
Base
Biology,
Cats,
Cattle,
Computational
Computer
Data,
Dogs,
Evaluation
Evolution,
Family,
Genes,
Genome,
Homeobox,
Human
Humans,
Mice,
Molecular
Molecular,
Multigene
Proteins,
Rats,
Ribosomal
Sequence
Sequence,
Simulation,
Software,
Studies,
fos,
(0)
URL
DOI
TeX
Genome-scale evolution: reconstructing gene orders in the ancestral species
Guillaume Bourque
, and
Pavel A Pevzner
.
Genome Res
12(1):26--36
(
January 2002
)
Guillaume Bourque
, and
Pavel A Pevzner
.
Genome Res
12(1):26--36
(
January 2002
)
5 years and 9 months ago
by
dzerbino
3
Algorithms,
Animals,
Cats,
Chromosomes
Chromosomes,
Evolution,
Gene
Genetic,
Genome,
Human,
Humans,
Mice,
Models,
Molecular,
Order,
Rearrangement,
Algorithms,
Animals,
Cats,
Chromosomes
Chromosomes,
Evolution,
Gene
Genetic,
Genome,
Human,
Humans,
Mice,
Models,
Molecular,
Order,
Rearrangement,
(0)
URL
DOI
TeX
Reconstructing large regions of an ancestral mammalian genome in silico
Mathieu Blanchette
,
Eric D Green
,
Webb Miller
, and
David Haussler
.
Genome Res
14(12):2412--23
(
December 2004
)
Mathieu Blanchette
,
Eric D Green
,
Webb Miller
, and
David Haussler
.
Genome Res
14(12):2412--23
(
December 2004
)
5 years and 9 months ago
by
dzerbino
1
(Genetics),
Alignment,
Analysis,
Animals,
Base
Computer
Conductance
Cystic
DNA,
Data,
Evolution,
Fibrosis
Functions,
Genetic
Genome,
Likelihood
Mammals,
Models,
Molecular
Molecular,
Phylogeny,
Regulator,
Sequence
Sequence,
Simulation,
Transmembrane
Variation
(Genetics),
Alignment,
Analysis,
Animals,
Base
Computer
Conductance
Cystic
DNA,
Data,
Evolution,
Fibrosis
Functions,
Genetic
Genome,
Likelihood
Mammals,
Models,
Molecular
Molecular,
Phylogeny,
Regulator,
Sequence
Sequence,
Simulation,
Transmembrane
Variation
(0)
URL
DOI
TeX
A whole-genome assembly of Drosophila
E W Myers
,
G G Sutton
,
A L Delcher
,
I M Dew
,
D P Fasulo
,
M J Flanigan
,
S A Kravitz
,
C M Mobarry
,
K H Reinert
,
K A Remington
,
E L Anson
,
R A Bolanos
,
H H Chou
,
C M Jordan
,
A L Halpern
,
S Lonardi
,
E M Beasley
,
R C Brandon
,
L Chen
,
P J Dunn
,
Z Lai
,
Y Liang
,
D R Nusskern
,
M Zhan
,
Q Zhang
,
X Zheng
,
G M Rubin
,
M D Adams
, and
J C Venter
.
Science
287(5461):2196--204
(
March 2000
)
E W Myers
,
G G Sutton
,
A L Delcher
,
I M Dew
,
D P Fasulo
,
M J Flanigan
,
S A Kravitz
,
C M Mobarry
,
K H Reinert
,
K A Remington
,
E L Anson
,
R A Bolanos
,
H H Chou
,
C M Jordan
,
A L Halpern
,
S Lonardi
,
E M Beasley
,
R C Brandon
,
L Chen
,
P J Dunn
,
Z Lai
,
Y Liang
,
D R Nusskern
,
M Zhan
,
Q Zhang
,
X Zheng
,
G M Rubin
,
M D Adams
, and
J C Venter
.
Science
287(5461):2196--204
(
March 2000
)
5 years and 9 months ago
by
dzerbino
1
Acid,
Algorithms,
Analysis,
Animals,
Biology
Chromatin,
Chromosome
Computational
Contig
DNA,
Data,
Drosophila
Euchromatin,
Genes,
Genome,
Heterochromatin,
Insect,
Mapping,
Molecular
Nucleic
Physical
Repetitive
Sequence
Sequences,
Sites,
Tagged
melanogaster,
Acid,
Algorithms,
Analysis,
Animals,
Biology
Chromatin,
Chromosome
Computational
Contig
DNA,
Data,
Drosophila
Euchromatin,
Genes,
Genome,
Heterochromatin,
Insect,
Mapping,
Molecular
Nucleic
Physical
Repetitive
Sequence
Sequences,
Sites,
Tagged
melanogaster,
(0)
URL
DOI
TeX
Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing
Michael C Wendl
.
Bull Math Biol
68(1):179--96
(
January 2006
)
Michael C Wendl
.
Bull Math Biol
68(1):179--96
(
January 2006
)
5 years and 9 months ago
by
dzerbino
1
Algorithms,
Analysis,
Animals,
DNA,
Genome,
Genomics,
Humans,
Models,
Sequence
Statistical
Algorithms,
Analysis,
Animals,
DNA,
Genome,
Genomics,
Humans,
Models,
Sequence
Statistical
(0)
URL
DOI
TeX
Whole-genome sequence assembly for mammalian genomes: Arachne 2
David B Jaffe
,
Jonathan Butler
,
Sante Gnerre
,
Evan Mauceli
,
Kerstin Lindblad-Toh
,
Jill P Mesirov
,
Michael C Zody
, and
Eric S Lander
.
Genome Res
13(1):91--6
(
January 2003
)
David B Jaffe
,
Jonathan Butler
,
Sante Gnerre
,
Evan Mauceli
,
Kerstin Lindblad-Toh
,
Jill P Mesirov
,
Michael C Zody
, and
Eric S Lander
.
Genome Res
13(1):91--6
(
January 2003
)
5 years and 9 months ago
by
dzerbino
1
Animals,
Biology,
Computational
Contig
Genome,
Humans
Mapping,
Mice,
Software,
Animals,
Biology,
Computational
Contig
Genome,
Humans
Mapping,
Mice,
Software,
(0)
URL
DOI
TeX
The Atlas genome assembly system
Paul Havlak
,
Rui Chen
,
K James Durbin
,
Amy Egan
,
Yanru Ren
,
Xing-Zhi Song
,
George M Weinstock
, and
Richard A Gibbs
.
Genome Res
14(4):721--32
(
April 2004
)
Paul Havlak
,
Rui Chen
,
K James Durbin
,
Amy Egan
,
Yanru Ren
,
Xing-Zhi Song
,
George M Weinstock
, and
Richard A Gibbs
.
Genome Res
14(4):721--32
(
April 2004
)
5 years and 9 months ago
by
dzerbino
1
Animals,
Artificial,
Bacterial
Chromosomes,
Contig
Genome,
Mapping,
Rats,
Software,
Animals,
Artificial,
Bacterial
Chromosomes,
Contig
Genome,
Mapping,
Rats,
Software,
(0)
URL
DOI
TeX
Hierarchical scaffolding with Bambus
Mihai Pop
,
Daniel S Kosack
, and
Steven L Salzberg
.
Genome Res
14(1):149--59
(
January 2004
)
Mihai Pop
,
Daniel S Kosack
, and
Steven L Salzberg
.
Genome Res
14(1):149--59
(
January 2004
)
5 years and 9 months ago
by
dzerbino
1
Algorithms,
Animals,
Bacillus
Bacterial,
Benchmarking,
Biology,
Brucella,
Computational
Contig
Databases,
Dogs,
Genetic,
Genome,
Genomics,
Haplotypes,
Mapping,
Shewanella,
Software
Software,
Staphylococcus,
Validation,
Wolbachia,
anthracis
Algorithms,
Animals,
Bacillus
Bacterial,
Benchmarking,
Biology,
Brucella,
Computational
Contig
Databases,
Dogs,
Genetic,
Genome,
Genomics,
Haplotypes,
Mapping,
Shewanella,
Software
Software,
Staphylococcus,
Validation,
Wolbachia,
anthracis
(0)
URL
DOI
TeX
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