BibSonomy :: user  :: dzerbino ::

bookmarks

publications

(11)   

• The phusion assembler
  James C Mullikin and Zemin Ning Genome Res13(1):81--90Jan2003.
  to Software, Mice Genome, Mapping, elegans, Contig Caenorhabditis Biology, Animals, Computational by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• PCAP: a whole-genome assembly program
  Xiaoqiu Huang and Jianmin Wang and Srinivas Aluru and Shiaw-Pyng Yang and LaDeana Hillier Genome Res13(9):2164--70Sep2003.
  to Software, Algorithms, Sequence Humans Alignment, Computational Animals, Mapping, Mice, Contig Biology, Genome, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• De novo repeat classification and fragment assembly
  Pavel A Pevzner and Paul A Pevzner and Haixu Tang and Glenn Tesler Genome Res14(9):1786--96Sep2004.
  to Human, Acid, Bacterial, Biology, Mapping, Multigene Sequence Linkage Algorithms, Cluster Contig Sequences, Genome, Nucleic Artificial, Repetitive Alignment, Computational (Genetics), Analysis, Humans, Family Chromosomes, by dzerbino and 1 other person on Sep 17, 2007, 8:19 PM
  BibTeX 
• ProbCons: Probabilistic consistency-based multiple sequence alignment
  Chuong B Do and Mahathi S P Mahabhashyam and Michael Brudno and Serafim Batzoglou Genome Res15(2):330--40Feb2005.
  to Computational Databases, Molecular Protein, Algorithms, Validation, Benchmarking, Software, Variation Acid Software Data, (Genetics) Biology, Sequence, Amino Alignment, Sequence by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• Aligning multiple genomic sequences with the threaded blockset aligner
  Mathieu Blanchette and W James Kent and Cathy Riemer and Laura Elnitski and Arian F A Smit and Krishna M Roskin and Robert Baertsch and Kate Rosenbloom and Hiram Clawson and Eric D Green and David Haussler and Webb Miller Genome Res14(4):708--15Apr2004.
  to Software, Genome, Data, Base Computational Human Family, Rats, Cattle, Ribosomal Dogs, Simulation, Multigene Alignment, Molecular, Humans, Sequence, Proteins, Animals, Evolution, Genes, fos, Cats, Mice, Computer Homeobox, Molecular Studies, Biology, Evaluation Sequence by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• A whole-genome assembly of Drosophila
  E W Myers and G G Sutton and A L Delcher and I M Dew and D P Fasulo and M J Flanigan and S A Kravitz and C M Mobarry and K H Reinert and K A Remington and E L Anson and R A Bolanos and H H Chou and C M Jordan and A L Halpern and S Lonardi and E M Beasley and R C Brandon and L Chen and P J Dunn and Z Lai and Y Liang and D R Nusskern and M Zhan and Q Zhang and X Zheng and G M Rubin and M D Adams and J C Venter Science287(5461):2196--204Mar2000.
  to Biology Genes, melanogaster, Tagged Sites, Analysis, Acid, Contig Insect, Physical Animals, Molecular DNA, Repetitive Data, Sequences, Drosophila Euchromatin, Computational Heterochromatin, Mapping, Chromosome Genome, Nucleic Sequence Chromatin, Algorithms, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• Beware of mis-assembled genomes
  Steven L Salzberg and James A Yorke Bioinformatics21(24):4320--1Dec2005.
  to Nucleic Repetitive Acid Computational Acid, Databases, Genomics, Biology, Software, Sequences, by dzerbino and 1 other person on Sep 17, 2007, 8:19 PM
  BibTeX 
• Whole-genome sequence assembly for mammalian genomes: Arachne 2
  David B Jaffe and Jonathan Butler and Sante Gnerre and Evan Mauceli and Kerstin Lindblad-Toh and Jill P Mesirov and Michael C Zody and Eric S Lander Genome Res13(1):91--6Jan2003.
  to Software, Genome, Computational Contig Mapping, Mice, Biology, Animals, Humans by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• Gene maps linearization using genomic rearrangement distances
  Guillaume Blin and Eric Blais and Danny Hermelin and Pierre Guillon and Mathieu Blanchette and Nadia El-Mabrouk J Comput Biol14(4):394--407May2007.
  to Genome, Sequence DNA, Genomics, Computational Software Analysis, Biology, Algorithms, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• A pseudo-boolean framework for computing rearrangement distances between genomes with duplicates
  S'ebastien Angibaud and Guillaume Fertin and Irena Rusu and St'ephane Vialette J Comput Biol14(4):379--93May2007.
  to Duplication, Algorithms, Computational Software, Sequence Genome, Gammaproteobacteria, Biology, Bacterial Gene Analysis, DNA, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• Hierarchical scaffolding with Bambus
  Mihai Pop and Daniel S Kosack and Steven L Salzberg Genome Res14(1):149--59Jan2004.
  to Software, Animals, Genetic, Validation, Software Bacterial, Wolbachia, Benchmarking, Dogs, Biology, Genome, Mapping, Databases, Staphylococcus, Contig Brucella, Computational Genomics, Algorithms, Bacillus Shewanella, anthracis Haplotypes, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX