BibSonomy :: user  :: dzerbino ::

bookmarks

publications

(11)   

• The phusion assembler
  James C Mullikin and Zemin Ning Genome Res13(1):81--90Jan2003.
  to Genome, Mice elegans, Software, Contig Animals, Mapping, Caenorhabditis Biology, Computational by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• ARACHNE: a whole-genome shotgun assembler
  Serafim Batzoglou and David B Jaffe and Ken Stanley and Jonathan Butler and Sante Gnerre and Evan Mauceli and Bonnie Berger and Jill P Mesirov and Eric S Lander Genome Res12(1):177--89Jan2002.
  to influenzae, Bacterial, Animals, Software, Sequence, Contig Drosophila Genome, Fungal, Alignment, Consensus Saccharomyces Human, cerevisiae, Algorithms, Humans melanogaster, Sequence Haemophilus Mapping, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• PCAP: a whole-genome assembly program
  Xiaoqiu Huang and Jianmin Wang and Srinivas Aluru and Shiaw-Pyng Yang and LaDeana Hillier Genome Res13(9):2164--70Sep2003.
  to Software, Contig Algorithms, Mapping, Sequence Biology, Animals, Humans Computational Alignment, Mice, Genome, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• De novo repeat classification and fragment assembly
  Pavel A Pevzner and Paul A Pevzner and Haixu Tang and Glenn Tesler Genome Res14(9):1786--96Sep2004.
  to Biology, Nucleic Genome, Algorithms, Human, Cluster Mapping, Multigene (Genetics), Sequences, Computational Humans, Alignment, Analysis, Artificial, Bacterial, Sequence Chromosomes, Contig Family Acid, Linkage Repetitive by dzerbino and 1 other person on Sep 17, 2007, 8:19 PM
  BibTeX 
• Fragment assembly with short reads
  Mark Chaisson and Pavel Pevzner and Haixu Tang Bioinformatics20(13):2067--74Sep2004.
  to Alignment, Feasibility Mapping, Contig Profiling, DNA, Expression Analysis, Studies, Algorithms, Data, Gene Base Molecular Sequence by dzerbino and 1 other person on Sep 17, 2007, 8:19 PM
  BibTeX 
• Assembling millions of short DNA sequences using SSAKE
  Ren'e L Warren and Granger G Sutton and Steven J M Jones and Robert A Holt Bioinformatics23(4):500--1Feb2007.
  to Base Sequence, Molecular Mapping Sequence Algorithms, Data, Software, Analysis, Mapping, Contig DNA, Chromosome by dzerbino and 1 other person on Sep 17, 2007, 8:19 PM
  BibTeX 
• A whole-genome assembly of Drosophila
  E W Myers and G G Sutton and A L Delcher and I M Dew and D P Fasulo and M J Flanigan and S A Kravitz and C M Mobarry and K H Reinert and K A Remington and E L Anson and R A Bolanos and H H Chou and C M Jordan and A L Halpern and S Lonardi and E M Beasley and R C Brandon and L Chen and P J Dunn and Z Lai and Y Liang and D R Nusskern and M Zhan and Q Zhang and X Zheng and G M Rubin and M D Adams and J C Venter Science287(5461):2196--204Mar2000.
  to Sequence Chromatin, Algorithms, Nucleic Tagged Animals, Analysis, Insect, DNA, Acid, Repetitive Computational Contig Sequences, Physical Data, Mapping, Euchromatin, Genome, Sites, melanogaster, Chromosome Molecular Biology Heterochromatin, Drosophila Genes, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• Whole-genome sequence assembly for mammalian genomes: Arachne 2
  David B Jaffe and Jonathan Butler and Sante Gnerre and Evan Mauceli and Kerstin Lindblad-Toh and Jill P Mesirov and Michael C Zody and Eric S Lander Genome Res13(1):91--6Jan2003.
  to Mice, Mapping, Biology, Software, Contig Computational Humans Genome, Animals, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• The Atlas genome assembly system
  Paul Havlak and Rui Chen and K James Durbin and Amy Egan and Yanru Ren and Xing-Zhi Song and George M Weinstock and Richard A Gibbs Genome Res14(4):721--32Apr2004.
  to Software, Rats, Contig Mapping, Animals, Chromosomes, Artificial, Genome, Bacterial by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• An Eulerian path approach to DNA fragment assembly
  P A Pevzner and H Tang and M S Waterman Proc Natl Acad Sci USA98(17):9748--53Aug2001.
  to Campylobacter Software, Bacterial, Theoretical, Lactococcus Models, DNA, Sequence lactis Alignment, jejuni, Algorithms, Analysis, Neisseria meningitidis, Contig Genome, Mapping, by dzerbino and 1 other person on Sep 17, 2007, 8:19 PM
  BibTeX 
• Hierarchical scaffolding with Bambus
  Mihai Pop and Daniel S Kosack and Steven L Salzberg Genome Res14(1):149--59Jan2004.
  to Wolbachia, Bacterial, Contig Bacillus Software, Benchmarking, Biology, Software Animals, Validation, Computational Genomics, Genome, Dogs, Genetic, anthracis Shewanella, Algorithms, Databases, Brucella, Staphylococcus, Mapping, Haplotypes, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX