BibSonomy :: user  :: dzerbino ::

bookmarks

publications

(12)   

• The phusion assembler
  James C Mullikin and Zemin Ning Genome Res13(1):81--90Jan2003.
  to Mapping, Contig Caenorhabditis Software, Genome, Animals, Mice elegans, Biology, Computational by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• ARACHNE: a whole-genome shotgun assembler
  Serafim Batzoglou and David B Jaffe and Ken Stanley and Jonathan Butler and Sante Gnerre and Evan Mauceli and Bonnie Berger and Jill P Mesirov and Eric S Lander Genome Res12(1):177--89Jan2002.
  to Animals, Mapping, Algorithms, Sequence, Bacterial, Contig Alignment, melanogaster, Software, influenzae, Consensus Human, Haemophilus cerevisiae, Genome, Humans Drosophila Sequence Saccharomyces Fungal, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• Minimus: a fast, lightweight genome assembler
  Daniel D Sommer and Arthur L Delcher and Steven L Salzberg and Mihai Pop BMC BioinformaticsFeb2007.
  to Chromosome Software, Sequence Alignment, Base User-Computer DNA, Interface Data, Design, Software Analysis, Sequence, Mapping, Molecular Algorithms, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• PCAP: a whole-genome assembly program
  Xiaoqiu Huang and Jianmin Wang and Srinivas Aluru and Shiaw-Pyng Yang and LaDeana Hillier Genome Res13(9):2164--70Sep2003.
  to Genome, Alignment, Algorithms, Contig Computational Animals, Software, Mice, Sequence Humans Mapping, Biology, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• De novo repeat classification and fragment assembly
  Pavel A Pevzner and Paul A Pevzner and Haixu Tang and Glenn Tesler Genome Res14(9):1786--96Sep2004.
  to Mapping, Linkage Bacterial, Alignment, Biology, Sequence Contig Human, Repetitive Algorithms, Computational Sequences, Cluster (Genetics), Family Multigene Humans, Chromosomes, Genome, Artificial, Analysis, Acid, Nucleic by dzerbino and 1 other person on Sep 17, 2007, 8:19 PM
  BibTeX 
• Fragment assembly with short reads
  Mark Chaisson and Pavel Pevzner and Haixu Tang Bioinformatics20(13):2067--74Sep2004.
  to DNA, Profiling, Molecular Data, Feasibility Sequence Base Studies, Mapping, Algorithms, Gene Expression Alignment, Contig Analysis, by dzerbino and 1 other person on Sep 17, 2007, 8:19 PM
  BibTeX 
• Assembling millions of short DNA sequences using SSAKE
  Ren'e L Warren and Granger G Sutton and Steven J M Jones and Robert A Holt Bioinformatics23(4):500--1Feb2007.
  to Mapping Base Chromosome Mapping, Analysis, Molecular Sequence, Data, DNA, Contig Sequence Software, Algorithms, by dzerbino and 1 other person on Sep 17, 2007, 8:19 PM
  BibTeX 
• A whole-genome assembly of Drosophila
  E W Myers and G G Sutton and A L Delcher and I M Dew and D P Fasulo and M J Flanigan and S A Kravitz and C M Mobarry and K H Reinert and K A Remington and E L Anson and R A Bolanos and H H Chou and C M Jordan and A L Halpern and S Lonardi and E M Beasley and R C Brandon and L Chen and P J Dunn and Z Lai and Y Liang and D R Nusskern and M Zhan and Q Zhang and X Zheng and G M Rubin and M D Adams and J C Venter Science287(5461):2196--204Mar2000.
  to Molecular melanogaster, Animals, Acid, Computational Algorithms, Nucleic Euchromatin, Repetitive Tagged Chromatin, Biology Chromosome Heterochromatin, Data, Drosophila Contig Insect, Sequences, Sequence Sites, DNA, Analysis, Physical Mapping, Genes, Genome, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• Whole-genome sequence assembly for mammalian genomes: Arachne 2
  David B Jaffe and Jonathan Butler and Sante Gnerre and Evan Mauceli and Kerstin Lindblad-Toh and Jill P Mesirov and Michael C Zody and Eric S Lander Genome Res13(1):91--6Jan2003.
  to Mapping, Animals, Computational Contig Biology, Humans Software, Genome, Mice, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• The Atlas genome assembly system
  Paul Havlak and Rui Chen and K James Durbin and Amy Egan and Yanru Ren and Xing-Zhi Song and George M Weinstock and Richard A Gibbs Genome Res14(4):721--32Apr2004.
  to Rats, Mapping, Bacterial Chromosomes, Artificial, Animals, Software, Contig Genome, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX 
• An Eulerian path approach to DNA fragment assembly
  P A Pevzner and H Tang and M S Waterman Proc Natl Acad Sci USA98(17):9748--53Aug2001.
  to Genome, Alignment, Lactococcus Mapping, Contig lactis Campylobacter meningitidis, Algorithms, jejuni, Bacterial, DNA, Models, Neisseria Theoretical, Analysis, Sequence Software, by dzerbino and 1 other person on Sep 17, 2007, 8:19 PM
  BibTeX 
• Hierarchical scaffolding with Bambus
  Mihai Pop and Daniel S Kosack and Steven L Salzberg Genome Res14(1):149--59Jan2004.
  to Algorithms, Contig Genetic, Dogs, Software, Computational Biology, Software Wolbachia, Genomics, Haplotypes, Bacillus Animals, Genome, Brucella, Shewanella, Mapping, Bacterial, Staphylococcus, Validation, anthracis Databases, Benchmarking, by dzerbino on Sep 17, 2007, 8:19 PM
  BibTeX