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tags
Sequence
Algorithms,
DNA,
Software,
Genome,
Alignment,
Analysis,
Sequence,
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Contig
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No matching items.
An Eulerian path approach to local multiple alignment for DNA sequences
Yu Zhang
, and
Michael S Waterman
.
Proc Natl Acad Sci USA
102(5):1285--90
(
February 2005
)
Yu Zhang
, and
Michael S Waterman
.
Proc Natl Acad Sci USA
102(5):1285--90
(
February 2005
)
5 years and 10 months ago
by
dzerbino
1
Acid
Acid,
Alignment,
Base
DNA,
Data,
Genetic,
Homology,
Models,
Molecular
Nucleic
Repetitive
Sequence
Sequence,
Sequences,
Acid
Acid,
Alignment,
Base
DNA,
Data,
Genetic,
Homology,
Models,
Molecular
Nucleic
Repetitive
Sequence
Sequence,
Sequences,
(0)
URL
DOI
TeX
Minimus: a fast, lightweight genome assembler
Daniel D Sommer
,
Arthur L Delcher
,
Steven L Salzberg
, and
Mihai Pop
.
BMC Bioinformatics
(
February 2007
)
Daniel D Sommer
,
Arthur L Delcher
,
Steven L Salzberg
, and
Mihai Pop
.
BMC Bioinformatics
(
February 2007
)
5 years and 10 months ago
by
dzerbino
2
Algorithms,
Alignment,
Analysis,
Base
Chromosome
DNA,
Data,
Design,
Interface
Mapping,
Molecular
Sequence
Sequence,
Software
Software,
User-Computer
Algorithms,
Alignment,
Analysis,
Base
Chromosome
DNA,
Data,
Design,
Interface
Mapping,
Molecular
Sequence
Sequence,
Software
Software,
User-Computer
(0)
URL
DOI
TeX
Multiple sequence alignment using partial order graphs
Christopher Lee
,
Catherine Grasso
, and
Mark F Sharlow
.
Bioinformatics
18(3):452--64
(
March 2002
)
Christopher Lee
,
Catherine Grasso
, and
Mark F Sharlow
.
Bioinformatics
18(3):452--64
(
March 2002
)
5 years and 10 months ago
by
dzerbino
2
Adenylyltransferase,
Algorithms,
Alignment,
Base
Control
DNA,
Data,
Databases,
Expressed
Factors,
Genetic,
Glucose-1-Phosphate
Homology,
Humans,
Messenger,
Models,
Molecular
Nucleotidyltransferases,
Plant
Proteins,
Quality
RNA,
Sensitivity
Sequence
Sequence,
Software,
Specificity,
Statistical,
Tags,
Time
and
Adenylyltransferase,
Algorithms,
Alignment,
Base
Control
DNA,
Data,
Databases,
Expressed
Factors,
Genetic,
Glucose-1-Phosphate
Homology,
Humans,
Messenger,
Models,
Molecular
Nucleotidyltransferases,
Plant
Proteins,
Quality
RNA,
Sensitivity
Sequence
Sequence,
Software,
Specificity,
Statistical,
Tags,
Time
and
(0)
URL
DOI
TeX
ProbCons: Probabilistic consistency-based multiple sequence alignment
Chuong B Do
,
Mahathi S P Mahabhashyam
,
Michael Brudno
, and
Serafim Batzoglou
.
Genome Res
15(2):330--40
(
February 2005
)
Chuong B Do
,
Mahathi S P Mahabhashyam
,
Michael Brudno
, and
Serafim Batzoglou
.
Genome Res
15(2):330--40
(
February 2005
)
5 years and 10 months ago
by
dzerbino
1
(Genetics)
Acid
Algorithms,
Alignment,
Amino
Benchmarking,
Biology,
Computational
Data,
Databases,
Molecular
Protein,
Sequence
Sequence,
Software
Software,
Validation,
Variation
(Genetics)
Acid
Algorithms,
Alignment,
Amino
Benchmarking,
Biology,
Computational
Data,
Databases,
Molecular
Protein,
Sequence
Sequence,
Software
Software,
Validation,
Variation
(0)
URL
DOI
TeX
Fragment assembly with short reads
Mark Chaisson
,
Pavel Pevzner
, and
Haixu Tang
.
Bioinformatics
20(13):2067--74
(
September 2004
)
Mark Chaisson
,
Pavel Pevzner
, and
Haixu Tang
.
Bioinformatics
20(13):2067--74
(
September 2004
)
5 years and 10 months ago
by
dzerbino
2
Algorithms,
Alignment,
Analysis,
Base
Contig
DNA,
Data,
Expression
Feasibility
Gene
Mapping,
Molecular
Profiling,
Sequence
Studies,
Algorithms,
Alignment,
Analysis,
Base
Contig
DNA,
Data,
Expression
Feasibility
Gene
Mapping,
Molecular
Profiling,
Sequence
Studies,
(0)
URL
DOI
TeX
The fragment assembly string graph
Eugene W Myers
.
Bioinformatics
(
September 2005
)
Eugene W Myers
.
Bioinformatics
(
September 2005
)
5 years and 10 months ago
by
dzerbino
3
Algorithms,
Analysis,
Base
Chromosome
DNA
DNA,
Data,
Fragmentation,
Mapping
Molecular
Sequence
Sequence,
Algorithms,
Analysis,
Base
Chromosome
DNA
DNA,
Data,
Fragmentation,
Mapping
Molecular
Sequence
Sequence,
(0)
URL
DOI
TeX
Aligning multiple genomic sequences with the threaded blockset aligner
Mathieu Blanchette
,
W James Kent
,
Cathy Riemer
,
Laura Elnitski
,
Arian F A Smit
,
Krishna M Roskin
,
Robert Baertsch
,
Kate Rosenbloom
,
Hiram Clawson
,
Eric D Green
,
David Haussler
, and
Webb Miller
.
Genome Res
14(4):708--15
(
April 2004
)
Mathieu Blanchette
,
W James Kent
,
Cathy Riemer
,
Laura Elnitski
,
Arian F A Smit
,
Krishna M Roskin
,
Robert Baertsch
,
Kate Rosenbloom
,
Hiram Clawson
,
Eric D Green
,
David Haussler
, and
Webb Miller
.
Genome Res
14(4):708--15
(
April 2004
)
5 years and 10 months ago
by
dzerbino
1
Alignment,
Animals,
Base
Biology,
Cats,
Cattle,
Computational
Computer
Data,
Dogs,
Evaluation
Evolution,
Family,
Genes,
Genome,
Homeobox,
Human
Humans,
Mice,
Molecular
Molecular,
Multigene
Proteins,
Rats,
Ribosomal
Sequence
Sequence,
Simulation,
Software,
Studies,
fos,
Alignment,
Animals,
Base
Biology,
Cats,
Cattle,
Computational
Computer
Data,
Dogs,
Evaluation
Evolution,
Family,
Genes,
Genome,
Homeobox,
Human
Humans,
Mice,
Molecular
Molecular,
Multigene
Proteins,
Rats,
Ribosomal
Sequence
Sequence,
Simulation,
Software,
Studies,
fos,
(0)
URL
DOI
TeX
Reconstructing large regions of an ancestral mammalian genome in silico
Mathieu Blanchette
,
Eric D Green
,
Webb Miller
, and
David Haussler
.
Genome Res
14(12):2412--23
(
December 2004
)
Mathieu Blanchette
,
Eric D Green
,
Webb Miller
, and
David Haussler
.
Genome Res
14(12):2412--23
(
December 2004
)
5 years and 10 months ago
by
dzerbino
1
(Genetics),
Alignment,
Analysis,
Animals,
Base
Computer
Conductance
Cystic
DNA,
Data,
Evolution,
Fibrosis
Functions,
Genetic
Genome,
Likelihood
Mammals,
Models,
Molecular
Molecular,
Phylogeny,
Regulator,
Sequence
Sequence,
Simulation,
Transmembrane
Variation
(Genetics),
Alignment,
Analysis,
Animals,
Base
Computer
Conductance
Cystic
DNA,
Data,
Evolution,
Fibrosis
Functions,
Genetic
Genome,
Likelihood
Mammals,
Models,
Molecular
Molecular,
Phylogeny,
Regulator,
Sequence
Sequence,
Simulation,
Transmembrane
Variation
(0)
URL
DOI
TeX
Assembling millions of short DNA sequences using SSAKE
René L Warren
,
Granger G Sutton
,
Steven J M Jones
, and
Robert A Holt
.
Bioinformatics
23(4):500--1
(
February 2007
)
René L Warren
,
Granger G Sutton
,
Steven J M Jones
, and
Robert A Holt
.
Bioinformatics
23(4):500--1
(
February 2007
)
5 years and 10 months ago
by
dzerbino
2
Algorithms,
Analysis,
Base
Chromosome
Contig
DNA,
Data,
Mapping
Mapping,
Molecular
Sequence
Sequence,
Software,
Algorithms,
Analysis,
Base
Chromosome
Contig
DNA,
Data,
Mapping
Mapping,
Molecular
Sequence
Sequence,
Software,
(0)
URL
DOI
TeX
A whole-genome assembly of Drosophila
E W Myers
,
G G Sutton
,
A L Delcher
,
I M Dew
,
D P Fasulo
,
M J Flanigan
,
S A Kravitz
,
C M Mobarry
,
K H Reinert
,
K A Remington
,
E L Anson
,
R A Bolanos
,
H H Chou
,
C M Jordan
,
A L Halpern
,
S Lonardi
,
E M Beasley
,
R C Brandon
,
L Chen
,
P J Dunn
,
Z Lai
,
Y Liang
,
D R Nusskern
,
M Zhan
,
Q Zhang
,
X Zheng
,
G M Rubin
,
M D Adams
, and
J C Venter
.
Science
287(5461):2196--204
(
March 2000
)
E W Myers
,
G G Sutton
,
A L Delcher
,
I M Dew
,
D P Fasulo
,
M J Flanigan
,
S A Kravitz
,
C M Mobarry
,
K H Reinert
,
K A Remington
,
E L Anson
,
R A Bolanos
,
H H Chou
,
C M Jordan
,
A L Halpern
,
S Lonardi
,
E M Beasley
,
R C Brandon
,
L Chen
,
P J Dunn
,
Z Lai
,
Y Liang
,
D R Nusskern
,
M Zhan
,
Q Zhang
,
X Zheng
,
G M Rubin
,
M D Adams
, and
J C Venter
.
Science
287(5461):2196--204
(
March 2000
)
5 years and 10 months ago
by
dzerbino
1
Acid,
Algorithms,
Analysis,
Animals,
Biology
Chromatin,
Chromosome
Computational
Contig
DNA,
Data,
Drosophila
Euchromatin,
Genes,
Genome,
Heterochromatin,
Insect,
Mapping,
Molecular
Nucleic
Physical
Repetitive
Sequence
Sequences,
Sites,
Tagged
melanogaster,
Acid,
Algorithms,
Analysis,
Animals,
Biology
Chromatin,
Chromosome
Computational
Contig
DNA,
Data,
Drosophila
Euchromatin,
Genes,
Genome,
Heterochromatin,
Insect,
Mapping,
Molecular
Nucleic
Physical
Repetitive
Sequence
Sequences,
Sites,
Tagged
melanogaster,
(0)
URL
DOI
TeX
Efficiently detecting polymorphisms during the fragment assembly process
Daniel Fasulo
,
Aaron Halpern
,
Ian Dew
, and
Clark Mobarry
.
Bioinformatics
(
January 2002
)
Daniel Fasulo
,
Aaron Halpern
,
Ian Dew
, and
Clark Mobarry
.
Bioinformatics
(
January 2002
)
5 years and 10 months ago
by
dzerbino
2
(Genetics),
Algorithms,
Alignment,
Analysis,
Base
Consensus
DNA
DNA,
Data,
Expression
Fragment
Fragmentation
Gene
Genetic,
Length,
Molecular
Polymorphism,
Profiling,
Restriction
Sequence
Sequence,
Variation
(Genetics),
Algorithms,
Alignment,
Analysis,
Base
Consensus
DNA
DNA,
Data,
Expression
Fragment
Fragmentation
Gene
Genetic,
Length,
Molecular
Polymorphism,
Profiling,
Restriction
Sequence
Sequence,
Variation
(0)
URL
DOI
TeX
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