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bookmarks

(114)

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likelihood network data - wiuf
to estimation network statistics by ebo on Apr 21, 2010, 4:09 AM
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Selection on Finite Sites under COmplex Demographic Events
to evolution molecular simulation software by ebo on Mar 8, 2010, 6:40 PM
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GenomePop: A program to simulate genomes in populations
to simulation software by ebo on Mar 8, 2010, 6:39 PM
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Geoff Nicholls home page
to people phylodynamics statistics by ebo on Mar 5, 2010, 11:16 PM
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David Welch — CIDD
to evolution networks people phylogenetics selection virus by ebo on Mar 5, 2010, 11:07 PM
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Common Errors in English Usage
to errors grammar by ebo and 11 other users on Mar 1, 2010, 9:09 PM
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Non-Errors
to grammar writing by ebo and 1 other user on Mar 1, 2010, 9:01 PM
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Distribute Project - Influenza Surveillance System
to data influenza surveillance by ebo on Feb 22, 2010, 3:49 AM
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SNAP: Stanford Network Analysis Project
to c libray network software by ebo and 1 other user on Feb 8, 2010, 7:03 PM
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CRAN - Package diagram
to R graphics software by ebo on Feb 3, 2010, 12:12 AM
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Karline Soetaert | NIOO-KNAW
to R people simulation software by ebo on Feb 2, 2010, 10:46 PM
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tjhladish's EpiFire at master - GitHub
A fast C++ API for simulating the spread of epidemics on contact networks.
to epi software by ebo on Feb 1, 2010, 10:17 PM
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GraphMovie: A Library for Generating Movies from Dynamic Graphs with igraph | Computational Legal Studies™
to dynamic graphics igraph network software by ebo on Jan 28, 2010, 7:32 PM
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SoNIA - Features Overview
to dynamic graphics network software sonia by ebo on Jan 28, 2010, 7:30 PM
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pymc - Project Hosting on Google Code
to bugs mcmc python software by ebo on Jan 28, 2010, 5:35 PM
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Network Analysis And Visualization
to code java library network software by ebo and 5 other users on Jan 23, 2010, 12:28 AM
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Mirjam Kretzschmar
to epi network people science by ebo on Jan 22, 2010, 3:45 AM
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Martina Morris
to epi network people science by ebo on Jan 22, 2010, 3:38 AM
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complex networks collaboratory
to lab network people by ebo on Jan 15, 2010, 10:24 PM
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CASOS: Home | CASOS
to labs networks people by ebo on Jan 15, 2010, 10:08 PM
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publications

(339)

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Prototype Packages for Managing and Animating Longitudinal Network Data: dynamicnetwork and rSoNIA
Skye Bender-deMol, Martina Morris, and James Moody Journal of Statistical Software 24(7):1--36 (Dec 25, 2007)
to R data networks software by ebo and 1 other user on Mar 12, 2010, 2:02 AM
BibTeX (0)
Tools for loading MEDLINE into a local relational database.
D. E. Oliver, G. Bhalotia, A. S. Schwartz, R. B. Altman, and M. A. Hearst BMC Bioinformatics (October 2004)
to database library medline by ebo and 2 other users on Jan 22, 2010, 10:21 PM
URL | DOI | BibTeX (0)
An exploratory study on the social and genotypic clustering of HIV infection in men having sex with men
S S Lee, D K Tam, Y Tan, W L Mak, K H Wong, J H Chen, and W C Yam AIDS 23(13):1755-1764 (August 2009)
to hiv imported network phylogeny by ebo on Jan 14, 2010, 5:10 AM
URL | DOI | BibTeX (0)
A microsimulation study of the effect of concurrent partnerships on the spread of HIV in Uganda
Martina Morris, and Mirjam Kretzschmar Mathematical Population Studies: An International Journal of Mathematical Demography (2000)
to HIV concurrent imported network by ebo on Jan 12, 2010, 2:02 AM
URL | BibTeX (0)
A Network Approach to Understanding Pathogen Population Structure
Caroline O. Buckee, and Sunetra Gupta Infectious Disease Informatics (2010)
to antigenic evolution imported influenza network phylogenetics by ebo on Jan 11, 2010, 11:17 PM
URL | BibTeX (0)
Deterministic epidemiological models at the individual level
Kieran Sharkey Journal of Mathematical Biology 57(3):311--331 (September 2008)
to epi imported network by ebo on Jan 7, 2010, 6:38 AM
URL | BibTeX (0)
SIR dynamics in random networks with heterogeneous connectivity
Erik Volz Journal of Mathematical Biology 56(3):293--310 (March 2008)
to hivnet imported by ebo on Jan 7, 2010, 6:35 AM
URL | BibTeX (0)
Perspectives on the basic reproductive ratio
J.M Heffernan, R.J Smith, and L.M Wahl Journal of The Royal Society Interface 2(4):281-293 (2005)
to imported by ebo on Dec 8, 2009, 11:37 PM
URL | DOI | BibTeX (0)
Synchrony, waves, and spatial hierarchies in the spread of influenza
Viboud, O N Bjørnstad, D L Smith, L Simonsen, M A Miller, and B T Grenfell Science 312(5772):447-451 (April 2006)
to epi imported influenza spatial synchrony by ebo on Dec 7, 2009, 6:24 PM
URL | DOI | BibTeX (0)
The evolutionary dynamics of a rapidly mutating virus within and between hosts: the case of hepatitis C virus
Luciani, and S Alizon PLoS Comput Biol (November 2009)
to epi evolution imported virus winmong by ebo on Dec 7, 2009, 3:52 PM
URL | DOI | BibTeX (0)
Detecting robust patterns in the spread of epidemics: a case study of influenza in the United States and France
Crépey, and M Barthélemy Am J Epidemiol 166(11):1244-1251 (December 2007)
to imported influenza network spatial by ebo on Dec 7, 2009, 2:16 AM
URL | DOI | BibTeX (0)
Evolution at a High Imposed Mutation Rate: Adaptation Obscures the Load in Phage T7
Rachael Springman, Thomas Keller, Ian Molineux, and James J. Bull Genetics (2009)
to @Plmut imported by ebo on Nov 14, 2009, 12:53 AM
URL | DOI | BibTeX (0)
Viral evolution under the pressure of an adaptive immune system - optimal mutation rates for viral escape
C. Kamp, C. O. Wilke, C. Adami, and S. Bornholdt ArXiv Condensed Matter e-prints (September 2002)
to evolution within-host by ebo on Nov 4, 2009, 9:04 PM
BibTeX (0)
Lethal mutagenesis in a structured environment
Shelby H. Steinmeyer, and Claus O. Wilke Journal of Theoretical Biology 261(1):67--73 (2009)
to @Plmut by ebo and 1 other user on Nov 4, 2009, 8:42 PM
URL | DOI | BibTeX (0)
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
Masami Hasegawa, Hirohisa Kishino, and Taka aki Yano Journal of Molecular Evolution 22(2):160--174 (October 1985)
to dating imported phylogenetics by ebo and 1 other user on Oct 30, 2009, 12:23 AM
URL | BibTeX (0)
Likelihood-Based Tests of Topologies in Phylogenetics
Nick Goldman, Jon P. Anderson, and Allen G. Rodrigo Systematic Biology 49(4):652-670 (2000)
to imported likelihood phylogenetics by ebo on Oct 30, 2009, 12:20 AM
URL | DOI | BibTeX (0)
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
J. Castresana Moleculr Biology and Evolution 17(4):540-552 (2000)
to alignment imported by ebo on Oct 29, 2009, 7:53 PM
URL | BibTeX (0)
An Improved General Amino Acid Replacement Matrix
Si Quang Le, and Olivier Gascuel Molecular Biology Evolution 25(7):1307-1320 (2008)
to imported substitution by ebo and 1 other user on Oct 27, 2009, 11:56 PM
URL | DOI | BibTeX (0)
Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees
K. Liu, S. Raghavan, S. Nelesen, C. R. Linder, and T. Warnow Science (June 2009)
to imported phylogenetics by ebo and 2 other users on Oct 27, 2009, 11:46 PM
DOI | BibTeX (0)
Accuracy of Coalescent Likelihood Estimates: Do We Need More Sites, More Sequences, or More Loci?
Joseph Felsenstein Molecular Biology Evolution 23(3):691-700 (2006)
to coalescent imported sampling by ebo on Oct 27, 2009, 11:00 PM
URL | DOI | BibTeX (0)

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