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1likelihood network data - wiuf
http://www.pnas.org/content/103/20/7566.full
14 years ago by @ebo
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estimation
network
statistics
estimationnetworkstatistics
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1Selection on Finite Sites under COmplex Demographic Events
http://sfscode.sourceforge.net/SFS_CODE/SFS_CODE_home/SFS_CODE_home.html
14 years ago by @ebo
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evolution
molecular
simulation
software
evolutionmolecularsimulationsoftware
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1GenomePop: A program to simulate genomes in populations
http://webs.uvigo.es/acraaj/GenomePop.htm
14 years ago by @ebo
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1Geoff Nicholls home page
http://www.stats.ox.ac.uk/~nicholls/
14 years ago by @ebo
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people
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statistics
peoplephylodynamicsstatistics
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1David Welch — CIDD
http://www.cidd.psu.edu/people/jdw21
14 years ago by @ebo
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evolutionnetworkspeoplephylogeneticsselectionvirus
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15Common Errors in English Usage
http://www.wsu.edu/~brians/errors/errors.html
14 years ago by @ebo
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2Non-Errors
http://www.wsu.edu/~brians/errors/nonerrors.html
14 years ago by @ebo
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1Distribute Project - Influenza Surveillance System
http://isdsdistribute.org/
14 years ago by @ebo
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datainfluenzasurveillance
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2SNAP: Stanford Network Analysis Project
http://snap.stanford.edu/snap/index.html
14 years ago by @ebo
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1CRAN - Package diagram
http://cran.r-project.org/web/packages/diagram/
14 years ago by @ebo
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1Karline Soetaert | NIOO-KNAW
http://www.nioo.knaw.nl/users/ksoetaert
14 years ago by @ebo
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R
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Rpeoplesimulationsoftware
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1tjhladish's EpiFire at master - GitHub
A fast C++ API for simulating the spread of epidemics on contact networks.
14 years ago by @ebo
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1GraphMovie: A Library for Generating Movies from Dynamic Graphs with igraph | Computational Legal Studies™
http://computationallegalstudies.com/2010/01/17/graphmovie-a-library-for-generating-movies-from-dynamic-graphs-with-igraph/
14 years ago by @ebo
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1SoNIA - Features Overview
http://www.stanford.edu/group/sonia/documentation/featuresOverview.html
14 years ago by @ebo
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sonia
dynamicgraphicsnetworksoftwaresonia
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1pymc - Project Hosting on Google Code
http://code.google.com/p/pymc/
14 years ago by @ebo
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6Network Analysis And Visualization
http://networkviz.sourceforge.net/
14 years ago by @ebo
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1Mirjam Kretzschmar
http://www.uni-bielefeld.de/gesundhw/ag2/mitarbeiter/kretzschmar.html
14 years ago by @ebo
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1Martina Morris
http://faculty.washington.edu/morrism/
14 years ago by @ebo
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1complex networks collaboratory
http://sites.google.com/site/cxnets/home
14 years ago by @ebo
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1CASOS: Home | CASOS
http://www.casos.cs.cmu.edu/index.php
14 years ago by @ebo
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2Prototype Packages for Managing and Animating Longitudinal Network Data: dynamicnetwork and rSoNIA
S. Bender-deMol, M. Morris, and J. Moody. Journal of Statistical Software, 24 (7): 1--36 (Dec 25, 2007)
14 years ago by @ebo
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R
data
networks
software
Rdatanetworkssoftware
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3Tools for loading MEDLINE into a local relational database.
D. Oliver, G. Bhalotia, A. Schwartz, R. Altman, and M. Hearst. BMC Bioinformatics, (October 2004)
14 years ago by @ebo
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database
library
medline
databaselibrarymedline
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1An exploratory study on the social and genotypic clustering of HIV infection in men having sex with men
S. Lee, D. Tam, Y. Tan, W. Mak, K. Wong, J. Chen, and W. Yam. AIDS, 23 (13): 1755-1764 (August 2009)
14 years ago by @ebo
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hiv
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hivimportednetworkphylogeny
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1A microsimulation study of the effect of concurrent partnerships on the spread of HIV in Uganda
M. Morris, and M. Kretzschmar. Mathematical Population Studies: An International Journal of Mathematical Demography, (2000)
14 years ago by @ebo
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HIV
concurrent
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network
HIVconcurrentimportednetwork
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1A Network Approach to Understanding Pathogen Population Structure
C. Buckee, and S. Gupta. Infectious Disease Informatics, (2010)
14 years ago by @ebo
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antigenic
evolution
imported
influenza
network
phylogenetics
antigenicevolutionimportedinfluenzanetworkphylogenetics
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1Deterministic epidemiological models at the individual level
K. Sharkey. Journal of Mathematical Biology, 57 (3): 311--331 (September 2008)
14 years ago by @ebo
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network
epiimportednetwork
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1SIR dynamics in random networks with heterogeneous connectivity
E. Volz. Journal of Mathematical Biology, 56 (3): 293--310 (March 2008)
14 years ago by @ebo
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hivnet
imported
hivnetimported
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1Perspectives on the basic reproductive ratio
J. Heffernan, R. Smith, and L. Wahl. Journal of The Royal Society Interface, 2 (4): 281-293 (2005)
15 years ago by @ebo
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imported
imported
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1Synchrony, waves, and spatial hierarchies in the spread of influenza
C. Viboud, O. Bjørnstad, D. Smith, L. Simonsen, M. Miller, and B. Grenfell. Science, 312 (5772): 447-451 (April 2006)
15 years ago by @ebo
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2The evolutionary dynamics of a rapidly mutating virus within and between hosts: the case of hepatitis C virus
F. Luciani, and S. Alizon. PLoS Comput Biol, (November 2009)
15 years ago by @ebo
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epi
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winmong
epievolutionimportedviruswinmong
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1Detecting robust patterns in the spread of epidemics: a case study of influenza in the United States and France
P. Crépey, and M. Barthélemy. Am J Epidemiol, 166 (11): 1244-1251 (December 2007)
15 years ago by @ebo
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imported
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1Evolution at a High Imposed Mutation Rate: Adaptation Obscures the Load in Phage T7
R. Springman, T. Keller, I. Molineux, and J. Bull. Genetics, (2009)
15 years ago by @ebo
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@Plmut
imported
@Plmutimported
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1Viral evolution under the pressure of an adaptive immune system - optimal mutation rates for viral escape
C. Kamp, C. Wilke, C. Adami, and S. Bornholdt. ArXiv Condensed Matter e-prints, (September 2002)
15 years ago by @ebo
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evolution
within-host
evolutionwithin-host
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2Lethal mutagenesis in a structured environment
S. Steinmeyer, and C. Wilke. Journal of Theoretical Biology, 261 (1): 67--73 (2009)
15 years ago by @ebo
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@Plmut
@Plmut
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3Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
M. Hasegawa, H. Kishino, and T. aki Yano. Journal of Molecular Evolution, 22 (2): 160--174 (October 1985)
15 years ago by @ebo
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dating
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phylogenetics
datingimportedphylogenetics
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1Likelihood-Based Tests of Topologies in Phylogenetics
N. Goldman, J. Anderson, and A. Rodrigo. Systematic Biology, 49 (4): 652-670 (2000)
15 years ago by @ebo
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imported
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phylogenetics
importedlikelihoodphylogenetics
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1Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
J. Castresana. Moleculr Biology and Evolution, 17 (4): 540-552 (2000)
15 years ago by @ebo
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alignment
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2An Improved General Amino Acid Replacement Matrix
S. Le, and O. Gascuel. Molecular Biology Evolution, 25 (7): 1307-1320 (2008)
15 years ago by @ebo
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imported
substitution
importedsubstitution
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4Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees
K. Liu, S. Raghavan, S. Nelesen, C. Linder, and T. Warnow. Science, (June 2009)
15 years ago by @ebo
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phylogenetics
importedphylogenetics
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1Accuracy of Coalescent Likelihood Estimates: Do We Need More Sites, More Sequences, or More Loci?
J. Felsenstein. Molecular Biology Evolution, 23 (3): 691-700 (2006)
15 years ago by @ebo
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