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tjhladish's EpiFire at master - GitHub
A fast C++ API for simulating the spread of epidemics on contact networks.
to epi software by ebo on Feb 1, 2010, 10:17 PM
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Mirjam Kretzschmar
to epi network people science by ebo on Jan 22, 2010, 3:45 AM
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Martina Morris
to epi network people science by ebo on Jan 22, 2010, 3:38 AM
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Phys. Rev. E 79, 026101 (2009): Time evolution of epidemic disease on finite and infinite networks
to Pourbohloul epi network by ebo on Jan 7, 2010, 6:41 AM
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Phys. Rev. E 79, 036113 (2009): Heterogeneous bond percolation on multitype networks with an application to epidemic dynamics
to Pourbohloul epi network by ebo on Jan 7, 2010, 6:40 AM
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Main ProMED-mail
to epi surveillance by ebo on Nov 10, 2009, 6:18 AM
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Spatial phylodynamics of HIV-1 epidemic emergence in east Africa
to HIV epi phylogenetics spatial by ebo on Oct 27, 2009, 11:01 PM
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Donald R. Olson - Knol
to epi people surveillance by ebo on Oct 13, 2009, 7:34 PM
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Paul Stehr-Green
to epi people surveillance by ebo on Oct 13, 2009, 7:30 PM
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Kim Pepin — CIDD
to epi people by ebo on Oct 7, 2009, 12:26 AM
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Spatiotemporal dynamics in the early stages of the 2009 A/H1N1 influenza pandemic - a knol by Thibaut Jombart
Epidemiology and public health planning will increasingly rely on the analysis of genetic sequence data. The ongoing...
to epi influenza spatial by ebo on Oct 4, 2009, 1:49 AM
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CDC - Influenza (Flu) | Flu Activity
Influenza Website of the Centers for Disease Control and Prevention (CDC)
to data epi flu surveillance by ebo on Oct 3, 2009, 1:40 AM
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Institute of Public Health - Richard Rothenberg, Professor
to epi network people by ebo on Oct 1, 2009, 10:13 PM
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Tracking the evolution and geographic spread of Influenza A - ein Knol-Artikel von Donovan Parks
The 2009 swine-origin strain of Influenza A H1N1 has spread to nearly all parts of the world, with 175 countries reporting...
to contact epi network phylogenetics software by ebo on Sep 24, 2009, 5:22 PM
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Sentinelles network > France > General
to data epi surveillance by ebo on Sep 24, 2009, 3:54 PM
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WHO - Global Atlas Of Infectious Diseases
to database epi by ebo on Aug 19, 2009, 5:42 PM
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University of Glasgow :: The Boyd Orr Centre for Population and Ecosystem Health :: Meggan Craft
to epi people science by ebo on Aug 19, 2009, 4:16 PM
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Gemina
Gemina is a web-based system designed to identify infectious pathogens and their representative genomic sequences through selection of associated epidemiol...
Gemina is a web-based system designed to identify infectious pathogens and their representative genomic sequences through selection of associated epidemiology metadata. Gemina supports the development of DNA signature-based assays for the detection of pathogens or sets of pathogen through the Insignia Signature Pipeline at the University of Maryland
to database epi molecular by ebo on Aug 7, 2009, 6:17 PM
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Pandemic (H1N1) 2009, Influenza Virus Resource
GenBank sequences from pandemic (H1N1) 2009
to epi molecular phylogenetics by ebo and 1 other user on Aug 2, 2009, 3:43 AM
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Joel C. Miller
to epi network people by ebo on Jun 11, 2009, 1:42 AM
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publications

(68)

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Deterministic epidemiological models at the individual level
Kieran Sharkey Journal of Mathematical Biology 57(3):311--331 (September 2008)
to epi imported network by ebo on Jan 7, 2010, 6:38 AM
URL | BibTeX (0)
Synchrony, waves, and spatial hierarchies in the spread of influenza
Viboud, O N Bjørnstad, D L Smith, L Simonsen, M A Miller, and B T Grenfell Science 312(5772):447-451 (April 2006)
to epi imported influenza spatial synchrony by ebo on Dec 7, 2009, 6:24 PM
URL | DOI | BibTeX (0)
The evolutionary dynamics of a rapidly mutating virus within and between hosts: the case of hepatitis C virus
Luciani, and S Alizon PLoS Comput Biol (November 2009)
to epi evolution imported virus winmong by ebo on Dec 7, 2009, 3:52 PM
URL | DOI | BibTeX (0)
Mixed Infection and the Genesis of Influenza Virus Diversity
Elodie Ghedin, Adam Fitch, Alex Boyne, Sara Griesemer, Jay DePasse, Jayati Bera, Xu Zhang, Rebecca A. Halpin, Marita Smit, Lance Jennings, Kirsten St. George, Edward C. Holmes, and David J. Spiro J. Virol. 83(17):8832-8841 (2009)
to epi evolution imported influenza by ebo on Oct 23, 2009, 4:33 AM
URL | DOI | BibTeX (0)
The Genesis and Spread of Reassortment Human Influenza A/H3N2 Viruses Conferring Adamantane Resistance
Lone Simonsen, Cecile Viboud, Bryan T. Grenfell, Jonathan Dushoff, Lance Jennings, Marita Smit, Catherine Macken, Mami Hata, Julia Gog, Mark A. Miller, and Edward C. Holmes Mol Biol Evol 24(8):1811-1820 (2007)
to epi imported influenza popgen by ebo on Oct 23, 2009, 4:28 AM
URL | DOI | BibTeX (0)
HIV transmission networks
Rothenberg Current Opinion in HIV and AIDS 4(4):260-265 (July 2009)
to HIV epi imported network review by ebo on Oct 5, 2009, 8:37 PM
URL | DOI | BibTeX (0)
Phylodynamics of Infectious Disease Epidemics
Erik M. Volz, Sergei L. Kosakovsky Pond, Melissa J. Ward, Andrew J. Leigh Brown, and Simon D.W. Frost Genetics (2009)
to epi imported phylogenetics by ebo on Oct 1, 2009, 10:21 PM
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Infecting epidemiology with genetics: a new frontier in disease ecology
E A Archie, G Luikart, and V O Ezenwa Trends in Ecology and Evolution 24(1):21-30 (January 2009)
to PhyloSem epi imported molecular by ebo on Aug 27, 2009, 5:28 PM
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Dynamics and selection of many-strain pathogens
J R Gog, and B T Grenfell Proc Natl Acad Sci U S A 99(26):17209-17214 (December 2002)
to epi evolution imported winmong by ebo on Aug 17, 2009, 1:05 AM
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A high-resolution genetic signature of demographic and spatial expansion in epizootic rabies virus
Biek, J C Henderson, L A Waller, C E Rupprecht, and L A Real Proc Natl Acad Sci U S A 104(19):7993-7998 (May 2007)
to bioinformatics epi evolution imported zoonotic by ebo on Aug 6, 2009, 7:33 PM
URL | DOI | BibTeX (0)
Evolutionary analysis of the dynamics of viral infectious disease
Oliver G. Pybus, and Andrew Rambaut Nature Reviews Genetics 10(8):540--550 (August 2009)
to bioinformatics epi evolution imported winmong by ebo and 1 other user on Aug 6, 2009, 7:25 PM
URL | BibTeX (0)
Local adaptation, evolutionary potential and host --parasite coevolution: interactions between migration, mutation, population size and generation time
S. Gandon, and Y. Michalakis Journal of Evolutionary Biology 15(3):451-462 (2002)
to coevolution epi evolution metapopulation by ebo and 1 other user on Aug 5, 2009, 9:09 PM
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Mapping the antigenic and genetic evolution of influenza virus
D J Smith, A S Lapedes, J C de Jong, T M Bestebroer, G F Rimmelzwaan, A D Osterhaus, and R A Fouchier Science 305(5682):371-376 (July 2004)
to antigenic epi evolution imported influenza winmong by ebo on Aug 5, 2009, 8:09 PM
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Improving the realism of deterministic multi-strain models: implications for modelling influenza A
Minayev, and N Ferguson Journal of the Royal Society Interface 6(35):509-518 (June 2009)
to deterministic epi evolution imported influenza by ebo on Aug 5, 2009, 7:13 PM
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The impact of evolutionary constraints on influenza dynamics
J R Gog Vaccine (July 2008)
to antigenic epi imported influenza winmong by ebo and 1 other user on Aug 5, 2009, 7:08 PM
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Ecological and immunological determinants of influenza evolution
N M Ferguson, A P Galvani, and R M Bush Nature 422(6930):428-433 (March 2003)
to epi evolution imported influenza by ebo and 1 other user on Aug 5, 2009, 7:02 PM
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Coexistence and specialization of pathogen strains on contact networks
K T Eames, and M J Keeling American Naturalist 168(2):230-241 (August 2006)
to epi evolution imported network by ebo on Aug 5, 2009, 6:59 PM
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Lethal mutagenesis of picornaviruses with N-6-modified purine nucleoside analogues
J D Graci, K Too, E D Smidansky, J P Edathil, E W Barr, D A Harki, J E Galarraga, J M Bollinger, B R Peterson, D Loakes, D M Brown, and C E Cameron Antimicrob Agents Chemother 52(3):971-979 (March 2008)
to @Plmut epi imported support by ebo and 1 other user on Aug 2, 2009, 2:28 AM
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Antigenic and genetic characteristics of swine-origin 2009 AH1N1 influenza viruses circulating in humans
R J Garten, C T Davis, C A Russell, B Shu, S Lindstrom, A Balish, W M Sessions, X Xu, E Skepner, V Deyde, M Okomo-Adhiambo, L Gubareva, J Barnes, C B Smith, S L Emery, M J Hillman, P Rivailler, J Smagala, M de Graaf, D F Burke, R A Fouchier, C Pappas, C M Alpuche-Aranda, H López-Gatell, H Olivera, I López, C A Myers, D Faix, P J Blair, C Yu, K M Keene, P D Dotson, D Boxrud, A R Sambol, S H Abid, K St George, T Bannerman, A L Moore, D J Stringer, P Blevins, G J Demmler-Harrison, M Ginsberg, P Kriner, S Waterman, S Smole, H F Guevara, E A Belongia, P A Clark, S T Beatrice, R Donis, J Katz, L Finelli, C B Bridges, M Shaw, D B Jernigan, T M Uyeki, D J Smith, A I Klimov, and N J Cox Science 325(5937):197-201 (July 2009)
to epi evolution flu imported by ebo on Jul 31, 2009, 11:47 PM
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Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses
E C Holmes, E Ghedin, N Miller, J Taylor, Y Bao, K St George, B T Grenfell, S L Salzberg, C M Fraser, D J Lipman, and J K Taubenberger PLoS Biol (September 2005)
to epi evolution imported influenza phylogenetics by ebo and 1 other user on Jul 30, 2009, 2:01 AM
URL | DOI | BibTeX (0)

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