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Selection on Finite Sites under COmplex Demographic Events
to evolution molecular simulation software by ebo on Mar 8, 2010, 6:40 PM
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David Welch — CIDD
to evolution networks people phylogenetics selection virus by ebo on Mar 5, 2010, 11:07 PM
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EvolDir Answers
to bb evolution by ebo on Sep 27, 2009, 8:29 PM
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HowTo/Phylogenetic Independent Contrasts - R-Phylo Wiki
to evolution phylogenetics statistics by ebo on Aug 14, 2009, 8:07 PM
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JCVI: GSC / Projects / Influenza / Publications
to IGSP bibliography evolution influenza molecular by ebo on Aug 7, 2009, 6:04 PM
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publications

(78)

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A Network Approach to Understanding Pathogen Population Structure
Caroline O. Buckee, and Sunetra Gupta Infectious Disease Informatics (2010)
to antigenic evolution imported influenza network phylogenetics by ebo on Jan 11, 2010, 11:17 PM
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The evolutionary dynamics of a rapidly mutating virus within and between hosts: the case of hepatitis C virus
Luciani, and S Alizon PLoS Comput Biol (November 2009)
to epi evolution imported virus winmong by ebo on Dec 7, 2009, 3:52 PM
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Viral evolution under the pressure of an adaptive immune system - optimal mutation rates for viral escape
C. Kamp, C. O. Wilke, C. Adami, and S. Bornholdt ArXiv Condensed Matter e-prints (September 2002)
to evolution within-host by ebo on Nov 4, 2009, 9:04 PM
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THE EFFECTS OF POPULATION BOTTLENECKS ON CLONAL INTERFERENCE, AND THE ADAPTATION EFFECTIVE POPULATION SIZE
Paulo R. A. Campos, and L. M. Wahl Evolution 63(4):950-958 (2009)
to adaptation bottlenecks evolution imported by ebo on Oct 27, 2009, 7:25 PM
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Simulating antigenic drift and shift in influenza A
N. Fachada, V.V. Lopes, and A. Rosa (2009)
to agent-based evolution imported influenza within-host by ebo and 1 other user on Oct 23, 2009, 5:09 AM
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Mixed Infection and the Genesis of Influenza Virus Diversity
Elodie Ghedin, Adam Fitch, Alex Boyne, Sara Griesemer, Jay DePasse, Jayati Bera, Xu Zhang, Rebecca A. Halpin, Marita Smit, Lance Jennings, Kirsten St. George, Edward C. Holmes, and David J. Spiro J. Virol. 83(17):8832-8841 (2009)
to epi evolution imported influenza by ebo on Oct 23, 2009, 4:33 AM
URL | DOI | BibTeX (0)
Fixation probabilities depend on life history: fecundity, generation time and survival in a burst-death model
H K Alexander, and L M Wahl Evolution 62(7):1600-1609 (July 2008)
to evolution fixation imported life_history winmong within-host by ebo on Oct 22, 2009, 11:45 PM
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Fixation Probability for Lytic Viruses: The Attachment-Lysis Model
Z. Patwa, and L. M. Wahl Genetics 180(1):459-470 (2008)
to bottleneck evolution fixation imported life_history winmong by ebo on Oct 22, 2009, 11:41 PM
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The fixation probability of beneficial mutations
Patwa, and L.M Wahl Journal of The Royal Society Interface 5(28):1279-1289 (2008)
to evolution fixation imported selection winmong by ebo on Oct 22, 2009, 11:12 PM
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Surviving the Bottleneck: Transmission Mutants and the Evolution of Microbial Populations
Andreas Handel, and Matthew R. Bennett Genetics 180(4):2193-2200 (2008)
to bacteria bottleneck evolution imported winmong by ebo on Oct 22, 2009, 11:10 PM
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The Speed of Adaptation in Large Asexual Populations
Claus O. Wilke Genetics 167(4):2045-2053 (2004)
to evolution imported speed winmong by ebo on Oct 22, 2009, 11:08 PM
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Phylogeography of the trumpetfishes Aulostomus: ring species complex on a global scale
Bowen, A L Bass, L A Rocha, W S Grant, and D R Robertson Evolution 55(5):1029-1039 (May 2001)
to PhyloSem evolution imported phylogeography by ebo on Sep 28, 2009, 5:30 PM
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Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
Rambaut, and N C Grassly Comput Appl Biosci 13(3):235-238 (June 1997)
to evolution imported sequence simulation software by ebo and 3 other users on Sep 27, 2009, 8:52 PM
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The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types
Recker, O G Pybus, S Nee, and S Gupta Proc Natl Acad Sci U S A 104(18):7711-7716 (May 2007)
to evolution immunity imported influenza by ebo on Sep 25, 2009, 7:43 PM
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Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology
I M Rouzine, A Rodrigo, and J M Coffin Microbiol Mol Biol Rev 65(1):151-185 (March 2001)
to evolution imported selection by ebo and 1 other user on Sep 22, 2009, 5:02 AM
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The evolutionary consequences of erroneous protein synthesis
D Allan Drummond, and C O Wilke Nature Reviews Genetics 10(10):715-724 (October 2009)
to dl evolution imported molecular review by ebo on Sep 20, 2009, 9:04 PM
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Perspective: Evolution and detection of genetic robustness
J A de Visser, J Hermisson, G P Wagner, L Ancel Meyers, H Bagheri-Chaichian, J L Blanchard, L Chao, J M Cheverud, S F Elena, W Fontana, G Gibson, T F Hansen, D Krakauer, R C Lewontin, C Ofria, S H Rice, G von Dassow, A Wagner, and M C Whitlock Evolution 57(9):1959-1972 (September 2003)
to dl evolution imported robustness by ebo on Sep 16, 2009, 4:21 AM
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Test of genetical isochronism for longitudinal samples of DNA sequences
Liu, and Y X Fu Genetics 176(1):327-342 (May 2007)
to HIV evolution heterochronous hot imported molecular sampling statistics substitution_rate by ebo on Aug 22, 2009, 4:27 AM
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Inferring evolutionary rates using serially sampled sequences from several populations
A G Rodrigo, M Goode, R Forsberg, H A Ross, and A Drummond Molecular Biology and Evolution 20(12):2010-2018 (December 2003)
to HIV evolution example imported phylogenetics sampling substitution_rate by ebo and 2 other users on Aug 22, 2009, 4:22 AM
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Using temporally spaced sequences to simultaneously estimate migration rates, mutation rate and population sizes in measurably evolving populations
Ewing, G Nicholls, and A Rodrigo Genetics 168(4):2407-2420 (December 2004)
to Bayesian HIV evolution heterochronous imported molecular phylogenetics substitution_rate by ebo on Aug 20, 2009, 1:44 AM
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