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Accuracy of protein-protein binding sites in high-throughput template-based modeling
P J Kundrotas, and I A Vakser PLoS Comput Biol (2010)
to docking by penkib on Apr 9, 2010, 7:46 AM
URL | DOI | BibTeX (0)
Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark
Kastritis, and A M Bonvin J Proteome Res (March 2010)
to docking ppi by penkib on Mar 29, 2010, 10:21 AM
URL | DOI | BibTeX (0)
SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology models
Sircar, and J J Gray PLoS Comput Biol (2010)
to docking by penkib on Jan 29, 2010, 10:38 AM
URL | DOI | BibTeX (0)
Flexible protein-protein docking based on Best-First search algorithm
Noy, and A Goldblum J Comput Chem (January 2010)
to docking by penkib and 1 other user on Jan 26, 2010, 9:44 AM
URL | DOI | BibTeX (0)
Protein-protein docking by shape-complementarity and property matching
Geppert, E Proschak, and G Schneider J Comput Chem (January 2010)
to docking by penkib and 1 other user on Jan 26, 2010, 9:43 AM
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Identical phosphatase mechanisms achieved through distinct modes of binding phosphoprotein substrate
Pazy, M A Motaleb, M T Guarnieri, N W Charon, R Zhao, and R E Silversmith Proc Natl Acad Sci U S A (January 2010)
to chemotaxis docking phosphorylation by penkib on Jan 20, 2010, 10:44 AM
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Mapping of interaction sites of the Schizosaccharomyces pombe protein Translin with nucleic acids and proteins: a combined molecular genetics and bioinformatics study
Eliahoo, R Ben Yosef, L Pérez-Cano, J Fernández-Recio, F Glaser, and H Manor Nucleic Acids Res (January 2010)
to docking by penkib on Jan 20, 2010, 10:44 AM
URL | DOI | BibTeX (0)
PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta
Chaudhury, S Lyskov, and J J Gray Bioinformatics (January 2010)
to docking software by penkib and 1 other user on Jan 19, 2010, 3:47 AM
URL | DOI | BibTeX (0)
FiberDock: Flexible induced-fit backbone refinement in molecular docking
Mashiach, R Nussinov, and H J Wolfson Proteins (December 2009)
to docking software by penkib on Jan 18, 2010, 11:10 AM
URL | DOI | BibTeX (0)
Shape complementarity of protein-protein complexes at multiple resolutions
Zhang, M Sanner, and A J Olson Proteins 75(2):453-467 (May 2009)
to docking protein by penkib on Jan 4, 2010, 3:54 AM
URL | DOI | BibTeX (0)
Protein-protein docking using region-based 3D Zernike descriptors
Venkatraman, Y D Yang, L Sael, and D Kihara BMC Bioinformatics (2009)
to docking by penkib and 1 other user on Jan 4, 2010, 3:53 AM
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In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis
Matsuzaki, Y Matsuzaki, T Sato, and Y Akiyama J Bioinform Comput Biol 7(6):991-1012 (December 2009)
to docking by penkib and 1 other user on Dec 24, 2009, 5:49 AM
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High-resolution protein complexes from integrating genomic information with molecular simulation
Schug, M Weigt, J N Onuchic, T Hwa, and H Szurmant Proc Natl Acad Sci U S A (December 2009)
to docking by penkib on Dec 21, 2009, 7:52 AM
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Versatile substrate protein recognition mechanism of the eukaryotic chaperonin CCT
Jayasinghe, C Tewmey, and G Stan Proteins (October 2009)
to docking molecular_recognition by penkib on Dec 4, 2009, 3:45 AM
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Exploring hierarchical refinement techniques for induced fit docking with protein and ligand flexibility
K W Borrelli, B Cossins, and V Guallar J Comput Chem (November 2009)
to docking by penkib on Nov 30, 2009, 3:03 AM
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Splitting statistical potentials into meaningful scoring functions: Testing the prediction of near-native structures from decoy conformations
Aloy, and B Oliva BMC Struct Biol 9(1):71-71 (November 2009)
to aloy docking by penkib on Nov 24, 2009, 4:04 AM
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Changes in Thermodynamic Properties of DNA Base Pairs in Protein-DNA Recognition
Samanta, J Chakrabarti, and D Bhattacharyya J Biomol Struct Dyn 27(4):429-442 (February 2010)
to docking by penkib on Nov 24, 2009, 4:04 AM
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Serine-254 enhances an induced fit mechanism in murine 5-aminolevulinate synthase
Lendrihas, G A Hunter, and G C Ferreira J Biol Chem (November 2009)
to docking by penkib on Nov 24, 2009, 4:04 AM
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Large-scale structural modeling of protein complexes at low resolution
Zhu, A Tovchigrechko, T Baronova, Y Gao, D Douguet, N O'Toole, and I A Vakser J Bioinform Comput Biol 6(4):789-810 (August 2008)
to docking by penkib and 1 other user on Nov 16, 2009, 3:07 AM
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GWIDD: Genome-wide protein docking database
P J Kundrotas, Z Zhu, and I A Vakser Nucleic Acids Res (November 2009)
to docking high_throughput by penkib on Nov 16, 2009, 3:04 AM
URL | DOI | BibTeX (0)

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