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No matching items.
Evolution of gene regulatory networks by fluctuating selection and intrinsic constraints
M E Tsuda
, and
M Kawata
.
PLoS Comput Biol
(
2010
)
M E Tsuda
, and
M Kawata
.
PLoS Comput Biol
(
2010
)
14 days ago
by
peter.ralph
2
fluctuating_selection
regulatory_networks
selection
temporal_variation
fluctuating_selection
regulatory_networks
selection
temporal_variation
(0)
URL
DOI
TeX
Detecting and Characterizing Genomic Signatures of Positive Selection in Global Populations
Xuanyao Liu
,
Rick Twee-Hee Ong
,
Esakimuthu Nisha Pillai
,
Abier M. Elzein
,
Kerrin S. Small
,
Taane G. Clark
,
Dominic P. Kwiatkowski
, and
Yik-Ying Teo
.
The American Journal of Human Genetics
(
2013
)
Xuanyao Liu
,
Rick Twee-Hee Ong
,
Esakimuthu Nisha Pillai
,
Abier M. Elzein
,
Kerrin S. Small
,
Taane G. Clark
,
Dominic P. Kwiatkowski
, and
Yik-Ying Teo
.
The American Journal of Human Genetics
(
2013
)
14 days ago
by
peter.ralph
1
haplotype
selection
statistics
haplotype
selection
statistics
(0)
URL
DOI
TeX
Natural selection reduced diversity on human Y chromosomes
Melissa A. Wilson Sayres
,
Kirk E. Lohmueller
, and
Rasmus Nielsen
.
(
2013
)
cite arxiv:1303.5012Comment: 21 pages, 2 figures.
Melissa A. Wilson Sayres
,
Kirk E. Lohmueller
, and
Rasmus Nielsen
.
(
2013
)
cite arxiv:1303.5012Comment: 21 pages, 2 figures.
a month and 8 days ago
by
peter.ralph
1
Y_chromosome
population_genomics
selection
Y_chromosome
population_genomics
selection
(0)
URL
DOI
TeX
Protein evolution with dependence among codons due to tertiary structure
D M Robinson
,
D T Jones
,
H Kishino
,
N Goldman
, and
J L Thorne
.
Mol Biol Evol
20(10):1692-1704
(
October 2003
)
D M Robinson
,
D T Jones
,
H Kishino
,
N Goldman
, and
J L Thorne
.
Mol Biol Evol
20(10):1692-1704
(
October 2003
)
a month and 9 days ago
by
peter.ralph
1
MCMC
context-dependent-mutation
protein_structure
selection
MCMC
context-dependent-mutation
protein_structure
selection
(0)
URL
DOI
TeX
Pervasive adaptive protein evolution apparent in diversity patterns around amino acid substitutions in Drosophila simulans
S Sattath
,
E Elyashiv
,
O Kolodny
,
Y Rinott
, and
G Sella
.
PLoS Genet
(
2011
)
S Sattath
,
E Elyashiv
,
O Kolodny
,
Y Rinott
, and
G Sella
.
PLoS Genet
(
2011
)
2 months and 16 days ago
by
peter.ralph
1
Drosophila
dip_in_diversity
hitchhiking
recombination
selection
Drosophila
dip_in_diversity
hitchhiking
recombination
selection
(0)
URL
DOI
TeX
Recombination Modulates How Selection Affects Linked Sites in Drosophila
Suzanne E. McGaugh
,
Caiti S. S. Heil
,
Brenda Manzano-Winkler
,
Laurence Loewe
,
Steve Goldstein
,
Tiffany L. Himmel
, and
Mohamed A. F. Noor
.
PLoS Biol
10(11):e1001422
(
November 2012
)
Suzanne E. McGaugh
,
Caiti S. S. Heil
,
Brenda Manzano-Winkler
,
Laurence Loewe
,
Steve Goldstein
,
Tiffany L. Himmel
, and
Mohamed A. F. Noor
.
PLoS Biol
10(11):e1001422
(
November 2012
)
2 months and 16 days ago
by
peter.ralph
1
Drosophila
dip_in_diversity
hitchhiking
population_genomics
selection
Drosophila
dip_in_diversity
hitchhiking
population_genomics
selection
(0)
URL
DOI
TeX
Strong Purifying Selection at Synonymous Sites in D. melanogaster
David S. Lawrie
,
Philipp W. Messer
,
Ruth Hershberg
, and
Dmitri A. Petrov
.
(
2013
)
cite arxiv:1301.3325.
David S. Lawrie
,
Philipp W. Messer
,
Ruth Hershberg
, and
Dmitri A. Petrov
.
(
2013
)
cite arxiv:1301.3325.
2 months and 23 days ago
by
peter.ralph
1
Drosophila
codon_bias
population_genomics
purifying_selection
selection
Drosophila
codon_bias
population_genomics
purifying_selection
selection
(0)
URL
DOI
TeX
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.
S V Muse
, and
B S Gaut
.
Molecular Biology and Evolution
11(5):715-724
(
1994
)
S V Muse
, and
B S Gaut
.
Molecular Biology and Evolution
11(5):715-724
(
1994
)
2 months and 24 days ago
by
peter.ralph
2
codon_bias
mutation_rate
selection
codon_bias
mutation_rate
selection
(0)
URL
DOI
TeX
Inference of mutation parameters and selective constraint in mammalian coding sequences by approximate Bayesian computation
P D Keightley
,
L Eöry
,
D L Halligan
, and
M Kirkpatrick
.
Genetics
187(4):1153-1161
(
April 2011
)
P D Keightley
,
L Eöry
,
D L Halligan
, and
M Kirkpatrick
.
Genetics
187(4):1153-1161
(
April 2011
)
2 months and 25 days ago
by
peter.ralph
1
approximate_bayesian_computation
codon_bias
human_genome
mutation_rate
selection
approximate_bayesian_computation
codon_bias
human_genome
mutation_rate
selection
(0)
URL
DOI
TeX
Population genetics of polymorphism and divergence
S A Sawyer
, and
D L Hartl
.
Genetics
132(4):1161-1176
(
December 1992
)
S A Sawyer
, and
D L Hartl
.
Genetics
132(4):1161-1176
(
December 1992
)
3 months ago
by
peter.ralph
1
Drosophila
Poisson_random_field
diffusion_approximation
selection
Drosophila
Poisson_random_field
diffusion_approximation
selection
(0)
URL
DOI
TeX
Gene frequency patterns in the Levene subdivided population model
Samuel Karlin
.
Theoretical Population Biology
11(3):356 - 385
(
1977
)
Samuel Karlin
.
Theoretical Population Biology
11(3):356 - 385
(
1977
)
3 months and 8 days ago
by
peter.ralph
1
fishers_diffusion
island_model
patchy_landscapes
selection
spatial_structure
fishers_diffusion
island_model
patchy_landscapes
selection
spatial_structure
(0)
URL
DOI
TeX
A selection-migration model in population genetics
W. H. Fleming
.
J. Math. Biol.
2(3):219--233
(
1975
)
W. H. Fleming
.
J. Math. Biol.
2(3):219--233
(
1975
)
3 months and 8 days ago
by
peter.ralph
1
existence_and_uniqueness
fishers_diffusion
selection
spatial_structure
existence_and_uniqueness
fishers_diffusion
selection
spatial_structure
(0)
URL
DOI
TeX
Context dependence, ancestral misidentification, and spurious signatures of natural selection
R D Hernandez
,
S H Williamson
, and
C D Bustamante
.
Mol Biol Evol
24(8):1792-1800
(
August 2007
)
R D Hernandez
,
S H Williamson
, and
C D Bustamante
.
Mol Biol Evol
24(8):1792-1800
(
August 2007
)
3 months and 22 days ago
by
peter.ralph
1
ancestral_state
parsimony
selection
site_frequency_spectrum
ancestral_state
parsimony
selection
site_frequency_spectrum
(0)
URL
DOI
TeX
Simultaneous inference of selection and population growth from patterns of variation in the human genome
S H Williamson
,
R Hernandez
,
A Fledel-Alon
,
L Zhu
,
R Nielsen
, and
C D Bustamante
.
Proc Natl Acad Sci U S A
102(22):7882-7887
(
May 2005
)
S H Williamson
,
R Hernandez
,
A Fledel-Alon
,
L Zhu
,
R Nielsen
, and
C D Bustamante
.
Proc Natl Acad Sci U S A
102(22):7882-7887
(
May 2005
)
3 months and 22 days ago
by
peter.ralph
1
demographic_inference
diffusion_approximation
human_genome
selection
site_frequency_spectrum
demographic_inference
diffusion_approximation
human_genome
selection
site_frequency_spectrum
(0)
URL
DOI
TeX
Stochastic processes and distribution of gene frequencies under natural selection
M KIMURA
.
Cold Spring Harb Symp Quant Biol
(
1955
)
M KIMURA
.
Cold Spring Harb Symp Quant Biol
(
1955
)
3 months and 22 days ago
by
peter.ralph
1
Wright-Fisher_diffusion
diffusion_approximation
selection
special_functions
Wright-Fisher_diffusion
diffusion_approximation
selection
special_functions
(0)
URL
DOI
TeX
Non-equilibrium allele frequency spectra via spectral methods
Sergio Lukić
,
Jody Hey
, and
Kevin Chen
.
Theoretical Population Biology
79(4):203 - 219
(
2011
)
Sergio Lukić
,
Jody Hey
, and
Kevin Chen
.
Theoretical Population Biology
79(4):203 - 219
(
2011
)
3 months and 22 days ago
by
peter.ralph
1
diffusion_approximation
population_structure
selection
site_frequency_spectrum
special_functions
spectral_theory
diffusion_approximation
population_structure
selection
site_frequency_spectrum
special_functions
spectral_theory
(0)
URL
DOI
TeX
Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes
Laurent Duret
, and
Nicolas Galtier
.
Annual Review of Genomics and Human Genetics
10(1):285-311
(
2009
)
PMID: 19630562.
Laurent Duret
, and
Nicolas Galtier
.
Annual Review of Genomics and Human Genetics
10(1):285-311
(
2009
)
PMID: 19630562.
4 months and 11 days ago
by
peter.ralph
1
biased_gene_conversion
recombination
review
selection
biased_gene_conversion
recombination
review
selection
(0)
URL
DOI
TeX
Darwinian and demographic forces affecting human protein coding genes
R Nielsen
,
M J Hubisz
,
I Hellmann
,
D Torgerson
,
A M Andrés
,
A Albrechtsen
,
R Gutenkunst
,
M D Adams
,
M Cargill
,
A Boyko
,
A Indap
,
C D Bustamante
, and
A G Clark
.
Genome Res
19(5):838-849
(
May 2009
)
R Nielsen
,
M J Hubisz
,
I Hellmann
,
D Torgerson
,
A M Andrés
,
A Albrechtsen
,
R Gutenkunst
,
M D Adams
,
M Cargill
,
A Boyko
,
A Indap
,
C D Bustamante
, and
A G Clark
.
Genome Res
19(5):838-849
(
May 2009
)
4 months and 12 days ago
by
peter.ralph
1
human_genome
scans_for_selection
selection
site_frequency_spectrum
human_genome
scans_for_selection
selection
site_frequency_spectrum
(0)
URL
DOI
TeX
Identifying Signatures of Selection in Genetic Time Series
Alison Feder
,
Sergey Kryazhimskiy
, and
Joshua B. Plotkin
.
(
2013
)
cite arxiv:1302.0452.
Alison Feder
,
Sergey Kryazhimskiy
, and
Joshua B. Plotkin
.
(
2013
)
cite arxiv:1302.0452.
4 months and 14 days ago
by
peter.ralph
1
popgen
selection
time_series
popgen
selection
time_series
(0)
URL
DOI
TeX
A transition function expansion for a diffusion model with selection
A. D. Barbour
,
S. N. Ethier
, and
R. C. Griffiths
.
Ann. Appl. Probab.
10(1):123--162
(
2000
)
A. D. Barbour
,
S. N. Ethier
, and
R. C. Griffiths
.
Ann. Appl. Probab.
10(1):123--162
(
2000
)
4 months and 25 days ago
by
peter.ralph
1
Fleming_Viot
Wright-Fisher_diffusion
coalescent_theory
selection
Fleming_Viot
Wright-Fisher_diffusion
coalescent_theory
selection
(0)
URL
DOI
TeX
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