user- List of publications, posters etc
- Background The problem of inferring the evolutionary history and constructing the phylogenetic tree with high performance has become one of the major pr...Background The problem of inferring the evolutionary history and constructing the phylogenetic tree with high performance has become one of the major problems in computational biology. Results A new phylogenetic tree construction method from a given set of objects (proteins, species, etc.) is presented. As an extension of ant colony optimization, this method proposes an adaptive phylogenetic clustering algorithm based on a digraph to find a tree structure that defines the ancestral relationships among the given objects. Conclusion Our phylogenetic tree construction method is tested to compare its results with that of the genetic algorithm (GA). Experimental results show that our algorithm converges much faster and also achieves higher quality than GA.
- A (humorous) computer dictionary - somewhat like the jargon file.
- A short historic overview of the evolution of digital computers. By now itself part of computer history.
- The "Original" Jargon File - in HTML. But really it should be read in plain ASCII to capture the spirit of the time
- Carbohydrate related posters and presentations
- Database of all known (2006) E. coli O-antigen structures.
- Provider of glycoconjugates and oligosaccharides, including blood group antigens, neoglycoconjugates and gangliosides.
- Experimental procedures for the structure determination of oligo- and polysaccharides.
- J Biol Chem 275(27):20660-20666 (July 2000)
- Nat Meth 2(11):817--824 (November 2005)
- J Org Chem 69(21):7206-7211 (October 2004)
- RNA 9(9):1108-1122 (2003)
- Proceedings of the National Academy of Sciences 95(18):10836-10841 (1998)
- Nucleic Acids Res 31(8):2066-2076 (April 2003)
- Mol Biol Evol 4(4):406-425 (1987)
- Carbohydrate Research 343(1):101--112 (January 2008)
- J Gen Virol 85(10):2741-2754 (2004)
- European Journal of Biochemistry 268(22):5740 - 5746 (2001)
- Microbiol. Mol. Biol. Rev. 63(3):523-553 (1999)
- PLoS Comput Biol (September 2006)
- Proceedings of the National Academy of Sciences 104(36):14478-14482 (2007)
- Carbohydr Res 341(10):1467-1475 (July 2006)
- J Biol Chem 270(30):17723-17729 (July 1995)
- Nonlinear Biomed Phys 1(1):7-7 (2007)
- Nucleic Acids Res 12(13):5419-5428 (July 1984)
- Nucleic Acids Res 20(18):4747-4751 (September 1992)
- Carbohydrate Research (March 1993)
- Canadian Journal of Chemistry 60(1):58-62 (1982)
