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publications

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
S. Guindon, JF Dufayard, V. Lefort, M. Anisimova, W. Hordijk, and O. Gascuel Systematic Biology 59(3):307-321 (2010)
by stephane.guindon and 1 other user on Apr 15, 2011, 3:22 AM
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Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion
D. Zwickl The University of Texas at Austin, (2006)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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The Jukes-Cantor Transformation and Additivity of Estimated Genetic Distances
V. Vach Analysing and Modeling Data and Knowledge, Springer, (1992)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Horizons in Biochemistry
E. Zuckerkandl, and L. Pauling chapter Molecular disease, evolution, and genic heterogeneity, page 189-225. Elsevier, Amsterdam, (1962)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Estimation of confidence in phylogeny: the complete-and-partial bootstrap technique
A. Zharkikh, and W.-H. Li Mol. Phylogenet. Evol. 4(1):44-63 (1995)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Estimation of evolutionary distance between nucleotide sequences
A. Zharkikh Journal of Molecular Evolution (1994)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Inconsistency of the Maximum Parsimony Method: The Case of Five Taxa With a Molecular Clock
A. Zharkikh, and W.-H. Li Systematic Biology (1993)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Statistical Properties of Bootstrap Estimation of Phylogenetic Variability from Nucleotide Sequences: II. Four Taxa without a Molecular Clock
Andrey Zharkikh, and Wen-Hsiung Li Journal of Molecular Evolution (1992)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Statistical properties of Bootstrap estimation of phylogenies variability from nucleotide sequences. I. Four Taxa with a molecular clock.
Andrey Zharkikh, and Wen-Hsiung Li Molecular Biology and Evolution (1992)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Construction d'un arbre sur la base d'un ensemble de distances entre ses feuilles
K. Zaretskii USpekHi Math. Nauk. (1965)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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To B or Not to B a flower: the role of DEFICIENS and GLOBOSA orthologs in the evolution of the angiosperms
L. Zahn, J. Leebens-Mack, C. DePamphilis, H. Ma, and G. Theissen Journal of Heredity (2005)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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On the origin of class B floral homeotic genes: functional substitution and dominant inhibition in \em Arabidopsis by expression of an orthologue from the gymnosperm \em Gnetum
K.-U. Winter, H. Saedler, and G. Theissen The Plant Journal (2002)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Fitting discrete probability distributions to evolutionary events
T. Uzzell, and K. Corbin Science (1971)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site.
Y. Tateno, N. Takezaki, and M. Nei Molecular Biology and Evolution (1994)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Bayes empirical Bayes inference of amino acid sites under positive selection
Z. Yang, W. Wong, and R. Nielsen Molecular Biology and Evolution (2005)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
Z. Yang, and R. Nielsen Molecular Biology and Evolution (2002)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Codon-substitution models for heterogeneous selection pressure at amino acid sites
Z. Yang, R. Nielsen, N. Goldman, and A.-M. Krabbe Pedersen Genetics (2000)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
Z. Yang, and R. Nielsen Molecular Biology and Evolution (2000)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Adaptative evolution of photoreceptors and visual pigments in vertebrates
S. Yokoyama, and R. Yokoyama Annual Review of Ecology and Systematics (1996)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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Maximum likelihood Estimation on large phylogenies and analysis of adaptative evolution in human influenza virus A
Z. Yang Journal of Molecular Evolution (2000)
to imported by stephane.guindon on Jan 22, 2009, 2:55 AM
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