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An Exercise in Irrelevance » Blog Archive » Why Realism is Wrong
[obo-discuss] 07.09.2010, Robert Hoehndorf
to ontology realism todo by tral on Sep 24, 2010, 4:11 PM
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DYNARG -- The Dynamics of Argumentation
to AI dynamics todo by tral on Jun 16, 2010, 1:30 PM
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Shirky: Ontology is Overrated -- Categories, Links, and Tags
to ontology toBib todo by tral and 18 other users on Feb 18, 2010, 1:02 PM
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GenericsDefaults_Thiel.pdf (application/pdf-Objekt)
to ontology toBib todo by tral on Feb 5, 2010, 3:40 PM
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(16)

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The markup is the model: Reasoning about systems biology models in the Semantic Web era
Douglas B. Kell, and Pedro Mendes Journal of Theoretical Biology 252(3):538 - 543 (2008)
to bio-model semantics todo by tral on Oct 12, 2011, 3:33 PM
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On Ontology, ontologies, Conceptualizations, Modeling Languages, and MetaModels
Giancarlo Guizzardi Proceeding of the 2007 conference on Databases and Information Systems IV: Selected Papers from the Seventh International Baltic Conference DB\&IS'2006, page 18--39. Amsterdam, The Netherlands, The Netherlands, IOS Press, (2007)
to ontology todo by tral on Oct 3, 2011, 11:04 PM
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Survey-based naming conventions for use in OBO Foundry ontology development
Schober, B Smith, S E Lewis, W Kusnierczyk, J Lomax, C Mungall, C F Taylor, P Rocca-Serra, and S A Sansone BMC Bioinformatics (2009)
to ontology ontology_engineering todo by tral and 1 other user on Oct 3, 2011, 10:16 PM
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Realism and reference ontologies: Considerations, reflections and problems
Gary H. Merrill Applied Ontology 5(3):189--221 (January 2010)
to ontology realism todo by tral and 1 other user on Oct 3, 2011, 9:04 PM
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Biomedical ontologies: a functional perspective
D L Rubin, N H Shah, and N F Noy Brief Bioinform 9(1):75-90 (January 2008)
to bio-ontology ontology_engineering todo by tral and 1 other user on Oct 3, 2011, 8:58 PM
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Ontological realism: A methodology for coordinated evolution of scientific ontologies
Barry Smith, and Werner Ceusters Applied Ontology 5(3):139--188 (January 2010)
to ontology ontology_engineering realism todo by tral and 1 other user on Oct 2, 2011, 2:04 PM
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Models in Science
Roman Frigg, and Stephan Hartmann The Stanford Encyclopedia of Philosophy, Summer 2009 edition, (2009)
to model philosophy_of_science todo by tral on Feb 22, 2011, 2:27 PM
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Computer science as empirical inquiry: symbols and search
Allen Newell, and Herbert A. Simon Communications of the ACM 19(3):113-126 (March 1976)
to AI todo by tral and 6 other users on Jan 19, 2011, 2:01 PM
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Semi-automated ontology generation within OBO-Edit
Wächter, and M Schroeder Bioinformatics 26(12):88-96 (June 2010)
to ontology ontology_engineering todo by tral on Sep 28, 2010, 9:41 AM
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Inferring Transcriptional Networks Using Prior Biological Knowledge and Constrained State-Space Models
J. Angus, M.J. Beal, J. Li, C. Rangel, and D.L. Wild Learning and Inference in Computational Systems Biology, MIT Press, Cambridge, (2010)
to KR bio-model todo by tral on Sep 28, 2010, 9:35 AM
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Adding a Little Reality to Building Ontologies for Biology
Phillip Lord, and Robert Stevens PLoS ONE 5(9):e12258 (September 2010)
to ontology realism todo by tral on Sep 24, 2010, 4:09 PM
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A Description Scheme of Biological Processes Based on Elementary Bricks of Action
Pierre Mazière, Claude Granier, and Franck Molina Journal of Molecular Biology 339(1):77 - 88 (2004)
to bio-kr systems_biology todo by tral on Mar 15, 2010, 4:23 PM
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Advances in semantic representation for multiscale biosimulation: a case study in merging models
M L Neal, J H Gennari, T Arts, and D L Cook Pac Symp Biocomput (2009)
to bio-model semantics todo by tral and 1 other user on Mar 10, 2010, 4:25 PM
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SBRML: a markup language for associating systems biology data with models
Joseph O. Dada, Irena Spasic, Norman W. Paton, and Pedro Mendes Bioinformatics (2010)
to ML bio-model todo by tral and 1 other user on Mar 10, 2010, 4:13 PM
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More light and colour - science and the new media
Stephen Curry The Biochemist 32(1):18-21 (2010)
to science todo web2.0 by tral on Mar 9, 2010, 12:51 PM
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Live Coverage of Scientific Conferences Using Web Technologies
Allyson L. Lister, Ruchira S. Datta, Oliver Hofmann, Roland Krause, Michael Kuhn, Bettina Roth, and Reinhard Schneider PLoS Comput Biol 6(1):e1000563 (January 2010)
to todo web2.0 by tral and 1 other user on Mar 9, 2010, 12:38 PM
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