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1Inferring structural variant cancer cell fraction
M. Cmero, K. Yuan, C. Ong, J. Schröder, D. Adams, P. Anur, R. Beroukhim, P. Boutros, D. Bowtell, P. Campbell and 68 other author(s). Nature Communications, 11 (1): 730-- (2020)
5 years ago by @marcsaric
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software
cancer-research
softwarecancer-research
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1Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines
K. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan and 730 other author(s). Cell Systems, 6 (3): 271--281.e7 (March 2018)
5 years ago by @marcsaric
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shouldread
wxs
exome
software
cancer-research
variant-calling
pan-cancer
fulltext
shouldreadwxsexomesoftwarecancer-researchvariant-callingpan-cancerfulltext
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1Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples
E. Barnell, P. Ronning, K. Campbell, K. Krysiak, B. Ainscough, L. Sheta, S. Pema, A. Schmidt, M. Richters, K. Cotto and 14 other author(s). Genetics in Medicine, (2018)
7 years ago by @marcsaric
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shouldread
best-practice
software
cancer-research
snv
fulltext
shouldreadbest-practicesoftwarecancer-researchsnvfulltext
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1Practices of research data curation in institutional repositories: A qualitative view from repository staff
D. Lee, and B. Stvilia. PLOS ONE, 12 (3): e0173987 (March 2017)
7 years ago by @joschirr
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design,
Libraries,
data
Librarians,
Data
Research
development,
Graduates,
Science
management,
Statistical
Software
policy,
design,Libraries,dataLibrarians,DataResearchdevelopment,Graduates,Sciencemanagement,StatisticalSoftwarepolicy,
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1FAST: FAST Analysis of Sequences Toolbox.
T. Lawrence, K. Kauffman, K. Amrine, D. Carper, R. Lee, P. Becich, C. Canales, and D. Ardell. Frontiers in genetics, (2015)
7 years ago by @karthikraman
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software
sequence-analysis
softwaresequence-analysis
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2Software applications for flux balance analysis.
M. Lakshmanan, G. Koh, B. Chung, and D. Lee. Briefings in bioinformatics, 15 (1): 108--122 (Jan 1, 2014)
7 years ago by @karthikraman
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software
review
flux-analysis
softwarereviewflux-analysis
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2Anton 2: Raising the Bar for Performance and Programmability in a Special-purpose Molecular Dynamics Supercomputer
D. Shaw, J. Grossman, J. Bank, B. Batson, J. Butts, J. Chao, M. Deneroff, R. Dror, A. Even, C. Fenton and 35 other author(s). Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, page 41--53. Piscataway, NJ, USA, IEEE Press, (2014)
8 years ago by @salotz
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hardware
supercomputer
molecular-dynamics
software
asic
md
anton
hardwaresupercomputermolecular-dynamicssoftwareasicmdanton
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1A pathology atlas of the human cancer transcriptome
M. Uhlen, C. Zhang, S. Lee, E. Sjöstedt, L. Fagerberg, G. Bidkhori, R. Benfeitas, M. Arif, Z. Liu, F. Edfors and 17 other author(s). Science, (August 2017)
8 years ago by @marcsaric
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database
software
cancer-research
SHOULDREAD
fulltext
databasesoftwarecancer-researchSHOULDREADfulltext
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1ExCNVSS: A Noise-Robust Method for Copy Number Variation Detection in Whole Exome Sequencing Data
J. Kong, J. Shin, J. Won, K. Lee, U. Lee, and J. Yoon. BioMed Research International, (2017)
8 years ago by @marcsaric
show all tags
software
copy-number-variation
sequencing
fulltext
softwarecopy-number-variationsequencingfulltext
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1Towards a Community Framework for Agent-Based Modelling
M. Janssen, L. Alessa, M. Barton, S. Bergin, and A. Lee. J. of Artif. Societies and Social Sim., 11 (2): 6 (2008)
9 years ago by @krevelen
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Education,
thesis
Standardization,
Documentation
Development,
Test
Beds,
Protocol,
Software
Primitives
Replication,
Education,thesisStandardization,DocumentationDevelopment,TestBeds,Protocol,SoftwarePrimitivesReplication,
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1MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories
R. McGibbon, K. Beauchamp, M. Harrigan, C. Klein, J. Swails, C. Hernández, C. Schwantes, L. Wang, T. Lane, and V. Pande. Biophysical Journal, 109 (8): 1528 - 1532 (2015)
9 years ago by @salotz
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molecular-dynamics
python
software
trajectory-analysis
molecular-dynamicspythonsoftwaretrajectory-analysis
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3ClearTK 2.0: Design Patterns for Machine Learning in UIMA
S. Bethard, P. Ogren, and L. Becker. Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), page 3289--3293. Reykjavik, Iceland, European Language Resources Association (ELRA), (May 2014)(Acceptance rate 61\%).
10 years ago by @ozborn
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software
engineering
softwareengineering
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1Inexpensive radar-based surveillance: Experimental study
V. Skvortsov, {. Lee, and {. Yang. Emerging Technologies for a Smarter World (CEWIT), 2012 9th International Conference Expo on, page 1-6. (November 2012)
11 years ago by @starlinq
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image
system;network
coverage
fence;Antenna
domain
computing;radar
area;radar
software;radar
relative
hash
post-processing
tool;automotive
tool;target
node;range
vehicle
measurement
source
radar;continuous
network
detection;target
shape;inexpensive
detection;public
information;virtual
tools;advanced
resolution;signal
storage;software
velocity
imaging;Security;Signal
measurements;data
radar-based
sensor
antennas;Radar
detection;road
topology;no-intrusion
measurements;Frequency
signal;open
object
techniques;applied
acquisition;data
algorithms;radar
software
resolution
layout;network
analysis;half-fishbone
measurement;Radar
radar;sensors;software
software;perceptual
surveillance
algorithm;post-processing
imagesystem;networkcoveragefence;Antennadomaincomputing;radararea;radarsoftware;radarrelativehashpost-processingtool;automotivetool;targetnode;rangevehiclemeasurementsourceradar;continuousnetworkdetection;targetshape;inexpensivedetection;publicinformation;virtualtools;advancedresolution;signalstorage;softwarevelocityimaging;Security;Signalmeasurements;dataradar-basedsensorantennas;Radardetection;roadtopology;no-intrusionmeasurements;Frequencysignal;openobjecttechniques;appliedacquisition;dataalgorithms;radarsoftwareresolutionlayout;networkanalysis;half-fishbonemeasurement;Radarradar;sensors;softwaresoftware;perceptualsurveillancealgorithm;post-processing
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4A call for bioimaging software usability
A. Carpenter, L. Kamentsky, and K. Eliceiri. Nat Meth, 9 (7): 666--670 (July 2012)
11 years ago by @alex_ruff
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visualization
software
image_processing
visualizationsoftwareimage_processing
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4A call for bioimaging software usability
A. Carpenter, L. Kamentsky, and K. Eliceiri. Nature Methods, 9 (7): 666–670 (June 2012)
12 years ago by @hpschu
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software
Bioimaging
softwareBioimaging
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1Improvement of Quality in Publication of Experimental Thermophysical Property Data: Challenges, Assessment Tools, Global Implementation, and Online Support
R. Chirico, M. Frenkel, J. Magee, V. Diky, C. Muzny, A. Kazakov, K. Kroenlein, I. Abdulagatov, G. Hardin, W. Acree and 21 other author(s). Journal of Chemical & Engineering Data, (2013)
12 years ago by @thorade
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experiment
software
2013
ThermoML
thermodynamic
properties
experimentsoftware2013ThermoMLthermodynamicproperties
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2Extended Architecture Analysis Description Language for Software Product Line Approach in Embedded Systems
Y. Oh, D. Lee, S. Kang, and J. Lee. 5th IEEE/ACM International Conference on Formal Methods and Models for Codesign, 2007. MEMOCODE 2007, page 87--88. IEEE, (June 2007)
13 years ago by @fritzsolms
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Connectors;
product
Architecture
engineering;
specification
requirement
analysis
Unified
domain;
formal
system
Architecture;
model;
Software
software;
automotive
derivation;
standard
line
modeling
variability
languages;
software
language
development;
architecture;
analysis;
reusability;
industry
specification;
Information
description
Automotive
extended
orthogonal
standards;
Embedded
Computer
system;
Communication
language;
architecture
systems;
Connectors;productArchitectureengineering;specificationrequirementanalysisUnifieddomain;formalsystemArchitecture;model;Softwaresoftware;automotivederivation;standardlinemodelingvariabilitylanguages;softwarelanguagedevelopment;architecture;analysis;reusability;industryspecification;InformationdescriptionAutomotiveextendedorthogonalstandards;EmbeddedComputersystem;Communicationlanguage;architecturesystems;
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2Fuzzy logic as a basic for use case point estimation
J. Lee, {. Lee, and {. Kuo. 2011 IEEE International Conference on Fuzzy Systems (FUZZ), page 2702--2707. IEEE, (June 2011)
13 years ago by @fritzsolms
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cost
Use
Software;
cases;
Electronic
mathematical
estimation
size
Registers;
estimation;
model;
theory;
fixed
function;
goal-driven
case
rule;
software
point;
Equations;
use
analysis;
project
membership
complexity;
logic;
Complexity
method;
mail;
Estimation;
point
scheduler
function
{UCP}
system;
meeting
fuzzy
costUseSoftware;cases;ElectronicmathematicalestimationsizeRegisters;estimation;model;theory;fixedfunction;goal-drivencaserule;softwarepoint;Equations;useanalysis;projectmembershipcomplexity;logic;Complexitymethod;mail;Estimation;pointschedulerfunction{UCP}system;meetingfuzzy
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1Design and Development of a Software-Defined Underwater Acoustic Modem for Sensor Networks for Environmental and Ecological Research
T. Fu, D. Doonan, C. Utley, R. Iltis, R. Kastner, and H. Lee. In proc. MTS/IEEE Oceans, (2006)
16 years ago by @intiha
show all tags
software
multipath
response
underwater
impusle
defined
softwaremultipathresponseunderwaterimpusledefined
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12Tabulator: Exploring and analyzing linked data on the semantic web
T. Berners-lee, Y. Chen, L. Chilton, D. Connolly, R. Dhanaraj, J. Hollenbach, A. Lerer, and D. Sheets. In Procedings of the 3rd International Semantic Web User Interaction Workshop (SWUI06, page 06. (2006)
17 years ago by @anneba
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web2.0
software
semanticweb
web2.0softwaresemanticweb
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publications (hide)24 displayallpublications onlypublications per page5102050100 sort byadded attitleauthorpublication dateentry typehelp for advanced sorting... RSSBibTeXRDFmore...

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publications (hide)24
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